Volume_from_pdb_v31

!xmipp_volume_from_pdb (v3.1)

Usage

Covert a PDB file to a volume.

Parameters

$: File to process $: Root name for output $--sampling <Ts1> $--high_sampling_rate <highTs0.08333333> $--size <output_dim-1> $: Center PDB with the center of mass $: Use blobs instead of scattering factors $``: Use a simple Gaussian adapted to each atom $--fixed_Gaussian <std-1> $`--intensityColumn <intensity_type`occupancy> where <intensity_type> can be:

Examples and notes

Sample at 1.6A and limit the frequency to 10A

xmipp_volume_from_pdb -i 1o7d.pdb --sampling 1.6
xmipp_transform_filter -i 1o7d.vol -o 1o7dFiltered.vol --fourier low_pass 10 raised_cosine 0.05 --sampling 1.6

User's comments