ConvertImagesToXmipp

Eman to Xmipp

proc2d <eman Images.hed> <Xmipp root name> spider-single
xmipp_selfile_create "<Xmipp root name>" > imgs.sel

Xmipp to Eman

awk '{printf ("proc2d %s <eman images.hed>\n",$1)}' < selfile.sel > runme.sh
chmod 755 runme.sh; ./runme.sh; rm runme.sh

DM3 to Raw

proc2d <dm3 image.dm3> <Xmippimage.xmp> spider-single
xmipp_convert_raw22spi -i <Xmippimage.xmp> -o <micrograph.raw> -generate_inf

Convert multiple images (bash)

Convert all images called .dm3 to .tif

for i in *.dm3; do fn=`echo $i | sed 's/.dm3//'`; xic -i $fn".dm3" -o $fn".tif"; done

-- Main.CoSS - 28 Nov 2008