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Tomo_align_refinement_v3
Realign a tilt series A tilt series is realigned with respect to a volume following a single particles approach (the volume is reprojected and the alignment parameters are reoptimized
Parameters
$: Reference volume $: Images to align $: rootname for the output rootname.doc contains a selfile with the images realigned rootname.stk contains the aligned and adjusted images in case --adjustGray or --generateAligned are given $`--max_rot_change <ang`2> $`--max_tilt_change <ang`2> $`--max_psi_change <ang`2> $`--max_shift_change <r`10> $`--rot_step <ang`0.25> $`--tilt_step <ang`0.25> $`--psi_step <ang`0.25> $`--shift_step <r`2> $: Adjust also gray values $``: Generate aligned images