Image_header_v3

!xmipp_image_header (v3.0)

Usage

Operate with image files headers. By default in Xmipp, geometrical transformations comming in images files headers are ignored. Instead this information is read from the images metadata if exist. With this program geometrical transformations can be extracted to a metadata or assigned to header, also allows print or reset image file headers.

See also Transform_geometry_v3

Parameters

$``: Input file: metadata, stack, volume or image. $--mode <modeoverwrite> where <mode> can be:

• • $-o, --output <output_file> $--print, -p <decompose0> $ or ( requires -o ): The output is a selfile with geometrical transformations read from image file headers. $ or: Write the geometrical transformations from selfile to the image file headers. $ or: Reset the geometrical transformations in image file headers. $: Round shifts to integers

Examples and notes

Print the header of the images in metadata:

xmipp_header -i images.sel

Extract geometrical transformations from image file headers:

xmipp_header -i smallStack.stk --extract -o header.doc

Assign the geometrical transformations from the metadata to header:

xmipp_header -i header.doc --assign

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