TowardsXmipp3

• TODO

  • Program pick tilt pairs (Airen) and protocol (Coss)
  • Add python 2.7 to external libraries and some needed libs: pysqlite, numpy, mathplotlib, tcl/tk 8.5 (Roberto y JM)
  • Visualize ML2D (JM)
  • Protocol RotSpectra (Coss) and VisualizeJ for it (Juanjo)
  • Protocol ML3D (Jose Miguel)
  • Protocol RCT (Jose Miguel)
  • Protocol ProjMatching and angular_class_average (Roberto)
  • Protocol CommonLines (now with Eman) (Coss)
• • Review WIKI for all (near end) (Kino)
  • Check libraries TESTS (c, python and java???)(Kino)
  • Check and update program TESTS (libraries and programs, also near end)(Kino)
  • Improve JAVA compilation on Sconscript
  • Improve XMIPP installation and setup
  • General testing and TUTORIAL writing
• • Protocol ML_TOMO(Roberto)
  • Protocol Partial Proj Subtraction (Alejandro)

NOTES

scons requires python 2.6 because relpath has been introduced in Python 2.6 (cf.  http://docs.python.org/library/os.path).

Main.RobertoMarabini

2011-09-10 - 14:58

Main.RobertoMarabini

2011-09-10 - 14:59

java compilation line to long for some systems

Main.RobertoMarabini

2011-09-10 - 16:00

ml_tomo does not work /gpfs/fs1/home/bioinfo/roberto/SUBVOL mpirun -np 4 /gpfs/fs1/home/bioinfo/roberto/xmipp_svn/bin/xmipp_mpi_ml_tomo --thr 2 -i run_bisdeg/metdata.xmd -o run_bisdeg/02deg --ref reference.spi --missing new_wedge.xmd --iter 1 --ang 2 --sym i3 --maxres .25 --maxCC	Main.RobertoMarabini	2011-09-11 - 09:26
Python must also be compiled with the zlib module enabled.	Main.JoseMiguelDeLaRosaTrevin	2011-09-14 - 09:29
gnu c/c++ and fortran compilers should be installed	Main.JoseMiguelDeLaRosaTrevin	2011-09-14 - 13:41
check PYTHONSTARTUP variable. It may refer to a different python. unset PYTHONSTARTUP	Main.RobertoMarabini	2011-09-22 - 11:52

Note: libraries/graphicsj/Xmipp_Browser/src/browser/windows/menubar/XmippMenuBar.java uses or overrides a deprecated API.