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Ctf_correct_idr_v31
Correct CTF by using IDR This utility allows you to make reconstructions removing the effect of the CTF. The projection images are modified according to a current guess of the reconstruction and the CTF definition. The modified images should be used for reconstruction which now serves as a new current guess for a new IDR iteration. The method is fully described at http://www.ncbi.nlm.nih.gov/pubmed/15005161
The program will assume that the image phase have already been corrected (otherwise the initial solution is too far from the true solution and the algorithm does not converge).
See also Ctf_phase_flip_v3
Parameters
--mode <modeoverwrite> where <mode> can be:
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- $
--label <image_labelimage> $-o, --output <output_file> $--oroot <root> $--save_metadata_stack <output_md> $: Store the original image filename in the output metadata in column imageOriginal. $: Preserve the columns from the input metadata. Some of the column values can be changed by the program.$``: Volume with the current reconstruction $ --mu <s1.8>
xmipp_ctf_correct_idr -i images.sel --vol currentGuess.vol -o idrCorrectedImages.stk