Repositories list

• AceTreePythonReader

  Public
  Acetree file format reader for python

  Python

  •

  GNU General Public License v3.0

  •0•0•2•0•Updated Jul 23, 2025Jul 23, 2025

• AceTree

  Public
  AceTree open source imaging analysis software from Starrynite project.

  Java

  •6•3•2•1•Updated Mar 27, 2025Mar 27, 2025

• TwinAttention

  Public
  Transformer Encoder for Spatial Analysis

  Python

  •1•0•0•0•Updated Mar 12, 2025Mar 12, 2025

• StarryNite

  Public
  Cell tracking in 3D for C. elegans embryos and other 3D data

  MATLAB

  •2•3•2•0•Updated Jan 13, 2025Jan 13, 2025

• heoa

  Public
  R

  •5•14•1•0•Updated Mar 15, 2023Mar 15, 2023

• WormGUIDES

  Public
  JavaFX desktop application for the Bao Lab WormGUIDES

  Java

  •

  GNU General Public License v3.0

  •7•2•1•1•Updated May 5, 2021May 5, 2021

• NeuronalCohesion

  Public
  Analysis scripts for quantitation of neuronal/pharyngeal cohesion

  MATLAB

  •0•0•0•0•Updated Jul 31, 2020Jul 31, 2020

• CellIDAlignment

  Public
  Source code for aligning unnamed point clouds of cell centroids against named atlas clouds to derive cell identities

  MATLAB

  •0•0•0•0•Updated Jul 31, 2020Jul 31, 2020

• WormGUIDES_PostTwitching

  Public
  Java

  •1•0•0•0•Updated Oct 4, 2019Oct 4, 2019

• Acebatch2

  Public
  Gene expression analysis tool for microscopy dataset

  Java

  •1•1•0•0•Updated Oct 4, 2019Oct 4, 2019

• DevelopmentDocumentation

  Public
  A repository which houses documentation for the development of software in the Zhirong Bao Lab's software suite

  1•0•0•0•Updated May 31, 2019May 31, 2019

• TissueModeling

  Public
  3D Modeling pipeline for the pharynx, muscle and hypoderm in the C. elegans embryo

  MATLAB

  •1•1•0•0•Updated Dec 7, 2018Dec 7, 2018