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Source code for aligning unnamed point clouds of cell centroids against named atlas clouds to derive cell identities

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zhirongbaolab/CellIDAlignment

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ProximityGraphs
ProximityGraphs
 
 
TPS3D
TPS3D
 
 
datafiles
datafiles
 
 
gmmreg_cpd
gmmreg_cpd
 
 
icp
icp
 
 
matlab_loading_code
matlab_loading_code
 
 
FilterDeathsN.m
FilterDeathsN.m
 
 
FilterDivisionsN.m
FilterDivisionsN.m
 
 
FilterUnnamedCellsN.m
FilterUnnamedCellsN.m
 
 
README.md
README.md
 
 
WG_prealignment_model_driver.m
WG_prealignment_model_driver.m
 
 
buildConstraintMatrixNeighborhood.m
buildConstraintMatrixNeighborhood.m
 
 
coalignNamedEmbryos.m
coalignNamedEmbryos.m
 
 
coalignNamedEmbryosPerTime.m
coalignNamedEmbryosPerTime.m
 
 
coalignNamedEmbryosToEM.m
coalignNamedEmbryosToEM.m
 
 
code_readme.txt
code_readme.txt
 
 
computeAffineLeastSquares.m
computeAffineLeastSquares.m
 
 
computeCorrectnessAndRealMatches.m
computeCorrectnessAndRealMatches.m
 
 
correctmatches.m
correctmatches.m
 
 
correctmatchesnames.m
correctmatchesnames.m
 
 
countConstraintViolationsNeighborhood.m
countConstraintViolationsNeighborhood.m
 
 
distance.m
distance.m
 
 
findNearbyDivisions.m
findNearbyDivisions.m
 
 
iterativeMatchWithConstraintsNoAnswerN.m
iterativeMatchWithConstraintsNoAnswerN.m
 
 
iterativeMatchWithConstraintsNoAnswerNPreGraph.m
iterativeMatchWithConstraintsNoAnswerNPreGraph.m
 
 
lapjv.m
lapjv.m
 
 
matchPointClounds.m
matchPointClounds.m
 
 
matchPointCloundsConsensus.m
matchPointCloundsConsensus.m
 
 
matchPointCloundsConsensusMultiembOptimizedIteratedN.m
matchPointCloundsConsensusMultiembOptimizedIteratedN.m
 
 
matchPointCloundsConsensusMultiembOptimizedN.m
matchPointCloundsConsensusMultiembOptimizedN.m
 
 
matchPointCloundsFast.m
matchPointCloundsFast.m
 
 
matchPointCloundsWithPerturbationUpdatingConstraintsN.m
matchPointCloundsWithPerturbationUpdatingConstraintsN.m
 
 
matchPointCloundsWithPerturbationUpdatingConstraintsNIt.m
matchPointCloundsWithPerturbationUpdatingConstraintsNIt.m
 
 
test_em_embryo1_alignment_new.m
test_em_embryo1_alignment_new.m
 
 
test_em_embryo2_alignment_new.m
test_em_embryo2_alignment_new.m
 
 
test_em_embryo9_alignment_new.m
test_em_embryo9_alignment_new.m
 
 
tissueLevelAccuracySimplified.m
tissueLevelAccuracySimplified.m
 
 
visualizeMatches.m
visualizeMatches.m
 
 
visualizeMatchesNamed.m
visualizeMatchesNamed.m
 
 

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CellIDAlignment

Source code for aligning unnamed point clouds of cell centroids against named atlas clouds to derive cell identities

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Source code for aligning unnamed point clouds of cell centroids against named atlas clouds to derive cell identities

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