Repositories list

• Lung-Cancer-Immunotherapy-

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Aug 14, 2025Aug 14, 2025

• Bronchiectasis_lower.airway_microbiome_paper

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  R

  •0•0•0•0•Updated Jun 22, 2025Jun 22, 2025

• VAP

  Public
  Ventilator-associated Pneumonia

  R

  •0•0•0•0•Updated May 16, 2025May 16, 2025

• BIO300

  Public
  HTML

  •0•0•0•0•Updated May 7, 2025May 7, 2025

• Chronic_MOC_murine

  Public
  Chronic MOC Murine Code

  0•0•1•0•Updated Apr 11, 2025Apr 11, 2025

• NAM.SARS.COV.2.Paper

  Public
  0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

• diet.fiber.colon.cancer

  Public
  R

  •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• Microbial_Metabolism

  Public
  R

  •1•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• PASC_paper

  Public
  PASC Repository

  1•0•0•0•Updated Aug 23, 2024Aug 23, 2024

• ResisTB_documentation

  Public
  The code and QIIME2 objects from the ResisTB manuscript.

  R

  •0•1•0•0•Updated May 24, 2024May 24, 2024

• TB_pemax

  Public
  South Africa Tuberculosis Project Submission

  R

  •0•0•0•0•Updated Apr 20, 2024Apr 20, 2024

• Early.Stage.Lung.Adenocarcinoma.Recurrence.Microbiome

  Public
  R

  •0•0•0•0•Updated Apr 9, 2024Apr 9, 2024

• Transplant_PGD_microbiome_paper

  Public
  R

  •0•0•0•0•Updated Feb 12, 2024Feb 12, 2024

• COVID_thrombosis_and_transcriptome

  Public
  0•0•0•0•Updated Dec 11, 2023Dec 11, 2023

• SARS-CoV-2.airway.adaptive.immune.response

  Public
  R

  •0•0•0•0•Updated Oct 2, 2023Oct 2, 2023

• Transplant_ACR_microbiome_paper

  Public
  R

  •0•0•0•0•Updated Sep 6, 2023Sep 6, 2023

• Mild_Moderate_COPD_microbiome

  Public
  Data Analysis for Manuscript

  R

  •0•0•0•0•Updated Sep 2, 2023Sep 2, 2023

• drought_index

  Public
  practice

  MIT License

  •0•0•0•0•Updated Nov 21, 2022Nov 21, 2022

• malignant_pleural_fluid

  Public
  R

  •0•0•0•0•Updated Aug 6, 2022Aug 6, 2022

• lung_cancer_prognosis_microbiome

  Public
  Lung Cancer Metagenome Manuscript

  HTML

  •0•2•0•0•Updated Feb 7, 2022Feb 7, 2022

• SARS_CoV2

  Public
  R

  •6•7•0•0•Updated Nov 18, 2021Nov 18, 2021

• HPC_R_iCellR

  Public
  R

  •0•0•0•0•Updated Nov 17, 2021Nov 17, 2021

• QIIME2_general_repository

  Public
  Shell

  •0•1•1•0•Updated Jul 21, 2021Jul 21, 2021

• niosh_microbiome_project

  Public
  R

  •0•0•0•0•Updated Dec 10, 2020Dec 10, 2020

• murine.host.microbiota.interaction

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  Murine dysbiosis experiments

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  •0•0•0•0•Updated Dec 10, 2020Dec 10, 2020

• BARTB_Naidoo_Paper

  Public
  BARTB Repository Code

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  •0•0•0•0•Updated Jul 30, 2020Jul 30, 2020

• bronchiectasis.neutrophil.elastase

  Public
  Sputum Neutrophil Elastase associates with microbiota and P.aeruginosa in bronchiectasis

  R

  •0•0•0•0•Updated Apr 30, 2020Apr 30, 2020

• lung_cancer_microbiome

  Public
  rna-seqmicrobiometranscriptome+ 4rna-seq-analysis16s16s-rrnamultiomics

  R

  •2•7•0•0•Updated Feb 5, 2020Feb 5, 2020

• functional_microbiomics

  Public
  Functional Microbiome repository code

  R

  •0•7•0•0•Updated Jan 31, 2020Jan 31, 2020

• segalmicrobiomelab.github.io

  Public
  HTML

  •0•0•0•0•Updated Jan 6, 2020Jan 6, 2020