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MSQ107
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.DS_Store
.DS_Store
 
 
191101_code_MSQ107.txt
191101_code_MSQ107.txt
 
 
191107_niosh.split.sh
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191112_milan_elastase.txt
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191112_rest_of_milan_run.sh
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191112_rest_of_milan_run.txt
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191115_rest_of_milan_run.txt
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191123_milan_elastase 1.sh
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191123_milan_elastase.sh
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191124_murine_LC_noclassifier 1.sh
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191124_murine_LC_noclassifier.sh
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200617_msq90.sh
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210223_msq90run2_msq91_merge.sh
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QIIME1.merge.filter.downstream.sh
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QIIME1.niosh.hpc.open.close.picking.sh
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QIIME1.niosh.hpc.sh
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QIIME2.allcommands.sh
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aspera.commands.txt
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classifer.commands.sh
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classifer.commands.txt
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gzip_fastq.txt
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header.hpc.sh
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merge_downstream.sh
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mkdir.commands.txt
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move.all.into.manifest.txt
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qiime2.classifer.97.SILVA.sh
qiime2.classifer.97.SILVA.sh
 
 
qiime2.inline.jobs.all.sh
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readme.txt
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### September 19, 2019 Wednesday 
### Code QIIME2 Import 
### Manifest 

### Benjamin G. Wu 
### Code is currently updated to run locally 
### SLURM/SBATCH code is under "header.hpc.sh" 

### QIIME2 all commands should be run as described 
### Classifier training can be used w/ different databases/gene repositories 

### Imran doesn't know how to use Git 
### Commits from local laptop @bananas
### Now working to edit 

### Will update with final code used for upstream QIIME2
### Will do generalized code 
### Last updated October 24, 2019

### https://www.youtube.com/watch?v=fJe3WSGo49M

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