Murine dysbiosis experiments
Included in this folder is the code used to analyze
16S rRNA data, metadata in the form of a text table, ASV table, taxonomy table
Data was uploaded in R and assessed using Phyloseq
Data was generated using QIIME2
Manuscript is currently in resubmission
Microbiome data can be found: NIH SRA PRJNA588801 Transcriptome data can be found: NIH SRA PRJNA603050
This repository is now published in: https://pubmed.ncbi.nlm.nih.gov/33166473/