v0.2.4

• Removed defaults channel from conda environment files to comply with anaconda licensing (Issue #36)

v0.2.3

What's Changed

• Updated provenance format to match current schema (Issue #27)
• Collect replicon gene info using abricate/plasmidfinder (Issue #28)
• Add support for --collect_outputs param to combine tabular outputs from multiple samples (Issue #30)

Full Changelog: v0.2.2...v0.2.3

v0.2.2

• Fixed issue where long/complex contig ID would appear in resistance_gene_report.tsv when using (dragon)flye-based assemblies (Issue #25)

v0.2.1

• Fixed issue with filename collisions in collect_provenance process (Issue #23)

v0.2.0

• Add --versioned_outdir flag, allowing outputs to be nested below a directory named with the pipeline name and (minor) version (Issue #15).
• Added the size of the contig that the resistance gene was identified on to the resistance gene report (Issue #17)
  • Note: Some other field headers in the resistance gene report have been modified for clarity, and order has been re-arranged. See README for updated list of report headers.

v0.1.0

Initial release.