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Update fastp and use <code>--trim_poly_g</code> flag

Status: Open.

#42 In BCCDC-PHL/plasmid-screen;

· dfornika opened on Jul 18, 2025

Add apptainer and docker profiles

Status: Open.

#41 In BCCDC-PHL/plasmid-screen;

· dfornika opened on Jul 18, 2025

Support (optional) long-reads

Status: Open.

#22 In BCCDC-PHL/plasmid-screen;

· dfornika opened on Nov 1, 2022

Align reads against plasmid reconstructions

Status: Open.

#21 In BCCDC-PHL/plasmid-screen;

· dfornika opened on Nov 1, 2022

Resistance gene report sometimes includes duplicate entries

Status: Open.

#20 In BCCDC-PHL/plasmid-screen;

· dfornika opened on Apr 14, 2022

Align against multiple candidate reference plasmids

Status: Open.

#19 In BCCDC-PHL/plasmid-screen;

· dfornika opened on Apr 11, 2022