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GTF used and VEP on different ensembl versions?

Status: Open.

#43 In tgen/GrandCanyon;

· PedalheadPHX opened on Jun 3, 2025

SnpSniffer support

enhancementNew feature or requestNew feature or request

Status: Open.

#42 In tgen/GrandCanyon;

· denriquez opened on Jan 30, 2025

Dog Support

Status: Open.

#41 In tgen/GrandCanyon;

· PedalheadPHX opened on Nov 18, 2024

Macro or not to Macro

Status: Open.

#40 In tgen/GrandCanyon;

· PedalheadPHX opened on Aug 17, 2024

pbmm2 alignment error

Status: Open.

#38 In tgen/GrandCanyon;

· skyman13 opened on Jun 19, 2024

Add HiC to assembly pipeline, update hifiasm and verkko

Status: Open.

#37 In tgen/GrandCanyon;

· tbenavi1 opened on Jun 12, 2024

SamStats: GC coverage plot

Status: Open.

#36 In tgen/GrandCanyon;

· PedalheadPHX opened on May 21, 2024

KINNEX Alignment with minimap

enhancementNew feature or requestNew feature or request

Status: Open.

#34 In tgen/GrandCanyon;

· PedalheadPHX opened on Jan 15, 2024

PacBio HLA STAR allele caller

enhancementNew feature or requestNew feature or request

Status: Open.

#33 In tgen/GrandCanyon;

· PedalheadPHX opened on Jan 9, 2024

Tandem Repeat Genotyping Tool (TGRT)

enhancementNew feature or requestNew feature or request

Status: Open.

#32 In tgen/GrandCanyon;

· PedalheadPHX opened on Jan 9, 2024

Margin BAM/CRAM

Status: Open.

#31 In tgen/GrandCanyon;

· PedalheadPHX opened on Dec 22, 2023

Samtools Status Outputs

Status: Open.

#30 In tgen/GrandCanyon;

· PedalheadPHX opened on Dec 21, 2023