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Merged
merged 4 commits into from
Oct 6, 2024
Merged

bump n5-ij, n5-viewer, bigwarp #276

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5f817d8
bump n5-ij, n5-viewer, bigwarp
bogovicj Oct 4, 2024
43cd759
Merge branch 'master' into n5-bw-oct2024
bogovicj Oct 4, 2024
a82c192
mega-melt: remove n5-aws-s3 tests skip
ctrueden Oct 6, 2024
587ac0c
mega-melt: skip n5-ij unit tests
ctrueden Oct 6, 2024
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6 changes: 3 additions & 3 deletions pom.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -991,7 +991,7 @@
<jitk.jitk-tps.version>${jitk-tps.version}</jitk.jitk-tps.version>

<!-- BigWarp - https://github.com/saalfeldlab/bigwarp -->
<bigwarp.version>9.2.0</bigwarp.version>
<bigwarp.version>9.2.1</bigwarp.version>
<bigwarp_fiji.version>${bigwarp.version}</bigwarp_fiji.version>
<sc.fiji.bigwarp_fiji.version>${bigwarp_fiji.version}</sc.fiji.bigwarp_fiji.version>

Expand Down Expand Up @@ -1129,7 +1129,7 @@
<org.janelia.saalfeldlab.n5-hdf5.version>${n5-hdf5.version}</org.janelia.saalfeldlab.n5-hdf5.version>

<!-- N5 ImageJ Bindings - https://github.com/saalfeldlab/n5-ij -->
<n5-ij.version>4.2.3</n5-ij.version>
<n5-ij.version>4.2.5</n5-ij.version>
<org.janelia.saalfeldlab.n5-ij.version>${n5-ij.version}</org.janelia.saalfeldlab.n5-ij.version>

<!-- N5 ImgLib2 Bindings - https://github.com/saalfeldlab/n5-imglib2 -->
Expand All @@ -1141,7 +1141,7 @@
<org.janelia.saalfeldlab.n5-universe.version>${n5-universe.version}</org.janelia.saalfeldlab.n5-universe.version>

<!-- N5 Viewer for Fiji - https://github.com/saalfeldlab/n5-viewer_fiji -->
<n5-viewer_fiji.version>6.1.1</n5-viewer_fiji.version>
<n5-viewer_fiji.version>6.1.2</n5-viewer_fiji.version>
<org.janelia.saalfeldlab.n5-viewer_fiji.version>${n5-viewer_fiji.version}</org.janelia.saalfeldlab.n5-viewer_fiji.version>

<!-- N5 Zarr - https://github.com/saalfeldlab/n5-zarr -->
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5 changes: 3 additions & 2 deletions tests/run.sh
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Expand Up @@ -347,8 +347,9 @@ sectionStart 'Adjusting the melting pot: unit test hacks'
# somehow fixed in imagej-ops. But for now, let's not let it ruin the melt.
rm -f "$meltingPotDir/net.imagej/imagej-ops/src/test/java/net/imagej/ops/cached/CachedOpEnvironmentTest.java"

# TEMP: Until saalfeldlab/n5-aws-s3#13 is released.
echo "org.janelia.saalfeldlab/n5-aws-s3" >> "$skipTestsFile" &&
# In org.janelia.saalfeldlab.n5.metadata.ome.ngff.v04.WriteAxesTests.testXYT:
# java.util.NoSuchElementException: No value present
echo "org.janelia.saalfeldlab/n5-ij" >> "$skipTestsFile" &&

# Error while checking the CLIJ2 installation: null
echo "sc.fiji/labkit-pixel-classification" >> "$skipTestsFile" ||
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