Repositories list

• icodon

  Public
  Dockerfile

  •0•0•0•0•Updated Aug 14, 2025Aug 14, 2025

• scanpy_scipy

  Public
  Dockerfile

  •0•0•0•0•Updated Aug 14, 2025Aug 14, 2025

• r_python

  Public
  Docker build with both R and Python for interactive data analysis

  Dockerfile

  •2•0•0•1•Updated Aug 12, 2025Aug 12, 2025

• nugent_2024

  Public
  Data, code, text, figures for reproducing manuscript

  Jupyter Notebook

  •0•0•2•0•Updated Aug 11, 2025Aug 11, 2025

• biomart

  Public
  Docker container for biomaRt R package

  Dockerfile

  •0•0•0•0•Updated Jul 27, 2025Jul 27, 2025

• uniprot.ws

  Public
  Docker container for UniProt.ws R/Bioconductor package

  Dockerfile

  •0•0•0•0•Updated Jul 26, 2025Jul 26, 2025

• bakker_2025

  Public
  Analysis Code for Manuscript

  Jupyter Notebook

  •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• rasilab.github.io

  Public
  Subramaniam Lab Public Website

  HTML

  •3•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• r_python_claude

  Public
  Dockerfile

  •0•0•0•0•Updated Jun 24, 2025Jun 24, 2025

• pysb

  Public
  Python framework for Systems Biology modeling

  Python

  •

  BSD 2-Clause "Simplified" License

  •71•0•0•0•Updated Jun 14, 2025Jun 14, 2025

• r_genbankr

  Public
  r_python container with genbankr

  Dockerfile

  •0•0•0•0•Updated May 10, 2025May 10, 2025

• burke_2022

  Public
  All data and scripts associated with Burke 2022 manuscript

  Jupyter Notebook

  •1•1•0•0•Updated Apr 24, 2025Apr 24, 2025

• edger

  Public
  Dockerfile

  •0•0•0•0•Updated Mar 19, 2025Mar 19, 2025

• lme4

  Public
  Dockerfile

  •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

• ggseqlogo

  Public
  Dockerfile

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• github_template

  Public template
  Jupyter Notebook

  •

  MIT License

  •0•3•0•0•Updated Nov 23, 2024Nov 23, 2024

• minimap2

  Public
  Dockerfile

  •0•0•0•0•Updated Sep 15, 2024Sep 15, 2024

• github_demo

  Public template
  Demo GitHub repo for laboratory research

  Jupyter Notebook

  •

  MIT License

  •1•11•3•0•Updated Aug 20, 2024Aug 20, 2024

• python

  Public
  Docker build for Subramaniam Lab default Python environment

  Dockerfile

  •1•0•0•2•Updated Jun 16, 2024Jun 16, 2024

• rosace-jupyter

  Public
  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

• chen_2023

  Public
  Analysis code for Chen 2023 manuscript

  Jupyter Notebook

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• r-phylogenetics

  Public
  Dockerfile

  •0•0•0•0•Updated Mar 5, 2024Mar 5, 2024

• latexdiff

  Public
  Docker build for latexdiff

  Dockerfile

  •0•0•0•0•Updated Feb 25, 2024Feb 25, 2024

• r

  Public
  Dockerfile for default R container

  Dockerfile

  •0•0•0•0•Updated Feb 16, 2024Feb 16, 2024

• viennarna

  Public
  Docker build for ViennaRNA package

  Dockerfile

  •0•0•0•0•Updated Feb 14, 2024Feb 14, 2024

• entrez-direct

  Public
  Dockerfile for Entrez Direct utilities

  Dockerfile

  •0•0•0•0•Updated Feb 11, 2024Feb 11, 2024

• bowtie

  Public
  Dockerfile for bowtie package

  Dockerfile

  •0•0•0•0•Updated Feb 10, 2024Feb 10, 2024

• hisat2_3n

  Public
  Dockerfile

  •0•0•0•0•Updated Jan 20, 2024Jan 20, 2024

• topgo

  Public
  Docker file for topGO

  Dockerfile

  •0•0•0•0•Updated Jan 8, 2024Jan 8, 2024

• ORFFinder

  Public
  ORFFinder in Python

  Python

  •

  MIT License

  •5•0•0•0•Updated Nov 29, 2023Nov 29, 2023