biomaRt Docker Container

This repository contains the Dockerfile for the biomaRt R package container.

Container Details

• Base Image: ghcr.io/rasilab/r_python:1.3.0
• Package Version: biomaRt 2.54.0 (Bioconductor)
• Registry: ghcr.io/rasilab/biomart

Usage

docker pull ghcr.io/rasilab/biomart:2.54.0

Running the Container

docker run -it --rm ghcr.io/rasilab/biomart:2.54.0 bash
source activate R
R

Features

• biomaRt R package for accessing BioMart databases
• Configured with Fred Hutch conda proxy
• Installed from bioconda channel

Building

docker build -t ghcr.io/rasilab/biomart:2.54.0 .