Open Problems in Single-Cell Analysis

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30 packages

base_python
Published Jun 13, 2023 by Open Problems in Single-Cell Analysis in openproblems-bio/base_images

87.6k
base_r
Published Jun 13, 2023 by Open Problems in Single-Cell Analysis in openproblems-bio/base_images

24.7k
utils/extract_uns_metadata
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

9.57k
h5ad/extract_uns_metadata
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

8.33k
data_processors/precompute_clustering_run
Published Jan 10, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

3.42k
metrics/kbet
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.84k
metrics/clustering_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.67k
metrics/isolated_label_f1
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.64k
data_processors/transform
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.63k
metrics/isolated_label_asw
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.48k
metrics/asw_label
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.48k
metrics/lisi
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.43k
metrics/regression_1
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

2.39k
metrics/graph_connectivity
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.37k
metrics/asw_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.35k
metrics/pcr
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.32k
metrics/cell_cycle_conservation
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.3k
metrics/regression_2
Published Aug 1, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

2.3k
schema/verify_data_structure
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

1.3k
metrics/f1
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

1.12k
metrics/accuracy
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

1.1k
validation/check_dataset_with_schema
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

1.1k
metrics/hvg_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

1k
data_processors/precompute_clustering_merge
Published Jan 10, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

922
metrics/distance_correlation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

845
metrics/ws_distance
Published Jan 22, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

844
metrics/coranking
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

835
metrics/ks_statistic_sc_features
Published Aug 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

798
process_datasets/generate_sim_spatialcluster
Published Aug 28, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

794
metrics/ks_statistic_gene_cell
Published Jul 26, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

746