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Open Problems in Single-Cell Analysis

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https://openproblems.bio

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openproblems openproblems Public

Formalizing and benchmarking open problems in single-cell genomics

Shell 335 83
website website Public

Legacy website

TeX 4 8

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Showing 10 of 36 repositories

core Public

openproblems-bio/core’s past year of commit activity

R 0 MIT 0 0 0 Updated Jun 10, 2025
task_foundation_models Public

openproblems-bio/task_foundation_models’s past year of commit activity

Shell 0 MIT 0 2 1 Updated Jun 3, 2025
task_dimensionality_reduction Public

openproblems-bio/task_dimensionality_reduction’s past year of commit activity

Python 1 MIT 2 5 1 Updated Jun 3, 2025
website Public
Legacy website

openproblems-bio/website’s past year of commit activity

TeX 4 CC-BY-4.0 8 33 (1 issue needs help) 13 Updated May 23, 2025
task_cyto_batch_integration Public

openproblems-bio/task_cyto_batch_integration’s past year of commit activity

Python 1 MIT 1 9 1 Updated May 23, 2025
task_perturbation_prediction Public
A benchmark on predicting how small molecules change gene expression in different cell types.

openproblems-bio/task_perturbation_prediction’s past year of commit activity

Python 11 MIT 3 5 2 Updated May 23, 2025
openproblems Public
Formalizing and benchmarking open problems in single-cell genomics

openproblems-bio/openproblems’s past year of commit activity

Shell 335 MIT 83 11 (1 issue needs help) 2 Updated May 23, 2025
task_batch_integration Public

openproblems-bio/task_batch_integration’s past year of commit activity

Python 8 MIT 8 7 10 Updated May 23, 2025
task_template Public template
This repo is a template to create a new task that has the correct files and structure needed to start a new task.

openproblems-bio/task_template’s past year of commit activity

Shell 1 MIT 2 0 0 Updated May 22, 2025
common_resources Public
Common resources for various benchmarks.

openproblems-bio/common_resources’s past year of commit activity

Nextflow 0 MIT 1 1 1 Updated May 15, 2025

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