Open Problems in Single-Cell Analysis

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30 packages

methods/pymde
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

95
methods/pca
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

93
methods/ivis
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

93
control_methods/true_features
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

93
methods/umap
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

92
methods/knnr_py
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

92
methods/neuralee
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

91
methods/cell2location
Published Jul 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_decomposition

91
methods/densmap
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

90
methods/knnr_r
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

88
methods/tsne
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

87
methods/phate
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

87
methods/nmfreg
Published Jul 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_decomposition

87
methods/rctd
Published Jul 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_decomposition

87
metrics/cms
Published Jul 10, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

87
control_methods/random_features
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

86
grn_methods/portia
Published Aug 28, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

83
grn_methods/ppcor
Published Aug 29, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

83
control_methods/random_predict
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

82
methods/lm
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

81
methods/scgpt_zeroshot
Published Jan 20, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

80
methods/tangram
Published Jul 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_decomposition

79
grn_methods/scenicplus
Published Aug 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

79
robustness_analysis/causal_grn
Published Sep 5, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

77
methods/vanillanmf
Published Jul 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_decomposition

77
control_methods/true_proportions
Published Jul 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_decomposition

75
methods/nnls
Published Jul 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_decomposition

75
methods/scgpt_finetuned
Published Jan 20, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

73
control_methods/mean_per_gene
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

73
methods/lmds
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

72