Open Problems in Single-Cell Analysis

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30 packages

methods/batchelor_fastmnn
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

236
methods/simlr
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

235
methods/dca
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

234
stability_analysis/permute_grn
Published Mar 12, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

234
methods/alra
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

232
control_methods/no_integration_batch
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

231
methods/combat
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

230
control_methods/embed_cell_types_jittered
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

229
methods/scalex
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

228
control_methods/embed_cell_types
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

228
metrics/kbet_pg_label
Published Feb 28, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

228
data_processors/process_dataset
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

226
methods/scvi
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

223
methods/scprint
Published Jan 6, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

221
methods/magic
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

218
methods/knn_smoothing
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

215
methods/scanvi_scarches
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

213
methods/scanvi
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

212
methods/harmony
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

211
methods/seurat_transferdata
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

210
methods/knn
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

209
methods/naive_bayes
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

209
methods/logistic_regression
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

208
methods/scanvi
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

207
methods/singler
Published Sep 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

206
methods/mlp
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

202
methods/scimilarity
Published Oct 11, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

198
control_methods/true_labels
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

196
project/sync_resources
Published Aug 27, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

194
methods/symsim
Published Jul 11, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

194