Open Problems in Single-Cell Analysis

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30 packages

datasets/loaders/openproblems_neurips2021_bmmc
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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common/check_yaml_schema
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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datasets/loaders/zenodo_spatial
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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datasets/loaders/cellxgene_census
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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common/process_task_results/yaml_to_json
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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datasets/loaders/tenx_visium
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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datasets/loaders/zenodo_spatial_slidetags
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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common/decompress_gzip
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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common/create_task_readme
Published Sep 8, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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data_processors/select_reference
Published Sep 20, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatially_variable_genes

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data_processors/split_dataset
Published Sep 20, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatially_variable_genes

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data_processors/simulate_svg
Published Sep 20, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatially_variable_genes

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control_methods/true_labels
Published Nov 5, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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methods/logistic_regression
Published Nov 5, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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multiomics/subset_hvg
Published Oct 5, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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metrics/accuracy
Published Nov 5, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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methods/scgpt_fine_tuned
Published Jan 17, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

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methods/scgpt_zero_shot
Published Dec 16, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

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exp_analysis/gene_annotation
Published Sep 27, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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preprocessing/process_opsca
Published Nov 20, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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metrics/emd_per_samples
Published Dec 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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metrics/metrics_all
Published Feb 2, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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process_data/op_multiome
Published Feb 26, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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process_data/op_perturbation
Published Feb 26, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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project/fetch_task_run
Published Oct 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

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datasets/loaders/vizgen_merscope
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods_cell_type_annotation/moscot
Published Mar 12, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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datasets/processors/crop_region
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods_cell_type_annotation/tacco
Published Mar 12, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods_expression_correction/resolvi_correction
Published Mar 18, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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