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@multicom-toolbox MULTICOM Toolbox

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    19 repositories

    • DNSS2

      Public
      Deep learning architectures for protein secondary structure prediction (version 2)
      Perl
      •9•10•1•2•Updated Mar 24, 2023Mar 24, 2023

    • deepdist

      Public
      Deep learning prediction of protein residue-residue distances
      Python
      •
      GNU General Public License v3.0
      •3•23•0•0•Updated Jun 28, 2022Jun 28, 2022

    • multicom

      Public
      The MULTICOM protein structure system. This repository includes the source code and documents of both template-based and template-free modeling of the MULTICOM protein structure prediction system. 1D feature prediction, contact prediction, and clustering-based model ranking programs are also included.
      Perl
      •9•17•0•0•Updated Nov 2, 2021Nov 2, 2021

    • ConEVA

      Public
      Toolbox for Assessment of Protein Contacts
      DIGITAL Command Language
      •
      GNU General Public License v2.0
      •2•2•0•0•Updated Jan 5, 2020Jan 5, 2020

    • CNNQA

      Public
      Deep convolutional neural networks for protein model quality assessment
      Perl
      •1•1•0•0•Updated Oct 29, 2019Oct 29, 2019

    • DeepCovQA

      Public
      Deep convolutional neural networks for protein model quality assessment
      Perl
      •5•4•0•0•Updated Oct 29, 2019Oct 29, 2019

    • EMAP

      Public
      The system of estimating model accuracy for protein structures
      Perl
      •1•2•0•0•Updated Aug 28, 2019Aug 28, 2019

    • DNCON2

      Public
      Deep convolutional neural networks for protein contact map prediction
      Perl
      •
      GNU General Public License v3.0
      •11•23•3•0•Updated Aug 5, 2019Aug 5, 2019

    • profun

      Public
      Profun - protein function prediction tool (one of the top methods in CAFA2 competition)
      Perl
      •1•1•0•0•Updated May 13, 2019May 13, 2019

    • pdcn

      Public
      protein function prediction using protein domain co-occurrence network (pdcn - ranked as one of the best methods in CAFA1 competition
      Perl
      •1•1•0•0•Updated May 13, 2019May 13, 2019

    • CONFOLD

      Public
      Contact-based protein structure prediction
      Perl
      •4•10•2•0•Updated Feb 12, 2019Feb 12, 2019

    • DeepQA

      Public
      Deep Belief Networks for Single Protein Structural Model Quality Assessment
      Perl
      •2•1•0•0•Updated Sep 24, 2018Sep 24, 2018

    • DeepSF

      Public
      Deep convolutional neural network for mapping protein sequences to folds
      Perl
      •5•9•1•0•Updated Sep 17, 2018Sep 17, 2018

    • DNTor

      Public
      Deep learning networks for protein torsion angle prediction
      Python
      •2•4•0•0•Updated Sep 11, 2018Sep 11, 2018

    • DNSS

      Public
      Deep learning networks for protein secondary structure prediction
      Perl
      •1•7•0•0•Updated Aug 20, 2018Aug 20, 2018

    • UniCon3D

      Public
      UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling. The tool was developed in Bioinformatics, Data Mining and Machine Learning (BDM) Lab at the University of Missouri, Columbia, USA.
      C++
      •6•5•1•1•Updated Mar 16, 2018Mar 16, 2018

    • CONFOLD2

      Public
      Improved ab initio protein structure reconstruction
      Perl
      •
      GNU General Public License v3.0
      •8•15•1•0•Updated Mar 7, 2018Mar 7, 2018

    • Chromosome3D

      Public
      Reconstructing Three-Dimensional Chromosomal Structures from Hi- C Interaction Frequency Data using Distance Geometry Simulated Annealing
      Perl
      •3•6•3•0•Updated Feb 11, 2018Feb 11, 2018

    • DoBo

      Public
      Perl
      •1•1•0•0•Updated Feb 11, 2018Feb 11, 2018