Deep learning architectures for protein secondary structure prediction (version 2)

Deep learning prediction of protein residue-residue distances

The MULTICOM protein structure system. This repository includes the source code and documents of both template-based and template-free modeling of the MULTICOM protein structure prediction system. 1D feature prediction, contact prediction, and clustering-based model ranking programs are also included.

Toolbox for Assessment of Protein Contacts

Deep convolutional neural networks for protein model quality assessment

Deep convolutional neural networks for protein model quality assessment

The system of estimating model accuracy for protein structures

Deep convolutional neural networks for protein contact map prediction

Profun - protein function prediction tool (one of the top methods in CAFA2 competition)

protein function prediction using protein domain co-occurrence network (pdcn - ranked as one of the best methods in CAFA1 competition