Repositories list

• obis-network-datasets

  Public
  Workflow for processing OBIS tagged datasets in GBIF

  Python

  •4•14•148•0•Updated Aug 19, 2025Aug 19, 2025

• mpaeu_abundance

  Public
  Experimenting abundance models

  R

  •0•0•0•0•Updated Aug 19, 2025Aug 19, 2025

• mpaeu_sdm_review

  Public
  Django application for reviewing SDMs

  Python

  •0•0•0•0•Updated Aug 19, 2025Aug 19, 2025

• edna-tracker-data

  Public
  GitHub action for transforming eDNA samples metadata from PlutoF

  Python

  •1•1•1•1•Updated Aug 19, 2025Aug 19, 2025

• metabarcoding-feed

  Public
  Python

  •0•0•0•0•Updated Aug 19, 2025Aug 19, 2025

• invertbase-feed

  Public
  Python

  •0•0•0•0•Updated Aug 19, 2025Aug 19, 2025

• obis-licenses

  Public
  R

  •0•0•0•0•Updated Aug 17, 2025Aug 17, 2025

• pyobis

  Public
  OBIS Python client

  oceanographymarine-datapython

  Jupyter Notebook

  •

  MIT License

  •12•18•17•2•Updated Aug 12, 2025Aug 12, 2025

• mpaeu_map_platform

  Public
  A platform for hosting SDM maps produced by OBIS

  R

  •0•4•0•0•Updated Aug 5, 2025Aug 5, 2025

• mpaeu_sdm

  Public
  Habitat range maps for European marine species

  R

  •3•8•0•0•Updated Aug 5, 2025Aug 5, 2025

• edna-reference-databases

  Public
  Python

  •0•0•3•0•Updated Aug 3, 2025Aug 3, 2025

• vocab_decision_tree

  Public
  An interactive version of the vocabulary decision tree featured in the OBIS manual

  Python

  •

  MIT License

  •0•0•3•0•Updated Jul 31, 2025Jul 31, 2025

• species-thermal-limits

  Public
  Experimenting methods to estimate species thermal limits based on occurrence data

  R

  •0•1•0•0•Updated Jul 31, 2025Jul 31, 2025

• ckan-docker

  Public
  Scripts and images to run CKAN using Docker Compose

  Python

  •245•0•4•0•Updated Jul 30, 2025Jul 30, 2025

• manual

  Public
  The OBIS manual

  CSS

  •24•6•21•1•Updated Jul 28, 2025Jul 28, 2025

• PacMAN-pipeline

  Public
  Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project

  R

  •

  MIT License

  •1•11•28•0•Updated Jul 26, 2025Jul 26, 2025

• ednacompare

  Public
  R package for comparing Darwin Core formatted eDNA datasets

  R

  •0•0•0•0•Updated Jul 26, 2025Jul 26, 2025

• mpaeu_studyarea

  Public
  Define study area shapefile for MPA Europe project

  R

  •

  MIT License

  •1•0•0•0•Updated Jul 26, 2025Jul 26, 2025

• mpaeu_msdm

  Public
  R

  •

  Other

  •0•0•0•0•Updated Jul 16, 2025Jul 16, 2025

• mpaeu_docs

  Public
  Documentation for the OBIS contribution to MPA Europe

  SCSS

  •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• obis-qc

  Public
  OBIS QC checks

  Python

  •5•10•25•0•Updated Jul 9, 2025Jul 9, 2025

• aphia-sync

  Public
  Synchrononizes changes in WoRMS to the OBIS database.

  Python

  •0•0•3•0•Updated Jul 8, 2025Jul 8, 2025

• species-report

  Public
  Generate species data sheets based on OBIS data

  R

  •0•0•1•0•Updated Jul 7, 2025Jul 7, 2025

• robis

  Public
  R client for the OBIS API

  R

  •

  Other

  •13•43•20•1•Updated Jul 5, 2025Jul 5, 2025

• obis-dois

  Public
  Python

  •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• thermal-ranges

  Public
  Get species thermal ranges based on occurrence data

  R

  •0•0•1•0•Updated Jul 1, 2025Jul 1, 2025

• mgnify-feed

  Public
  Python

  •0•0•0•0•Updated Jun 24, 2025Jun 24, 2025

• whomp-species-lists

  Public
  Python

  •0•0•0•0•Updated Jun 20, 2025Jun 20, 2025

• obis-open-data

  Public
  Python

  •0•0•1•0•Updated Jun 17, 2025Jun 17, 2025

• rs.obis.org

  Public
  HTML

  •0•0•0•0•Updated Jun 2, 2025Jun 2, 2025