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Add config params for vsearch maxaccepts/maxrejects/maxhits/lca_cutoff

Status: Open.

#106 In iobis/PacMAN-pipeline;

· pieterprovoost opened on Apr 29, 2025

BLAST/LCA results with low identity not removed

Status: Open.

#105 In iobis/PacMAN-pipeline;

· pieterprovoost opened on Dec 6, 2024

phyloseq object does not work with psadd::plot_krona

bugSomething isn't workingSomething isn't working

Status: Open.

#104 In iobis/PacMAN-pipeline;

· pieterprovoost opened on Nov 11, 2024

Use UDB database for vsearch

Status: Open.

#103 In iobis/PacMAN-pipeline;

· pieterprovoost opened on Nov 7, 2024

Remove special characters before taxon matching

Status: Open.

#102 In iobis/PacMAN-pipeline;

· pieterprovoost opened on Nov 5, 2024

Docker: configure strict channel priorities

Status: Open.

#101 In iobis/PacMAN-pipeline;

· pieterprovoost opened on Nov 4, 2024

sampleSizeValue does not appear to match sum of reads per ASV

bugSomething isn't workingSomething isn't working

Status: Open.

#96 In iobis/PacMAN-pipeline;

· pieterprovoost opened on Jun 26, 2024

Create cleanup script

Status: Open.

#95 In iobis/PacMAN-pipeline;

· pieterprovoost opened on Jun 6, 2024

Ensure that original identification is preserved regardless of WoRMS match

WoRMS matching

Status: Open.

#92 In iobis/PacMAN-pipeline;

· pieterprovoost opened on Dec 15, 2023

Add citation

Status: Open.

#91 In iobis/PacMAN-pipeline;

· pieterprovoost opened on Dec 7, 2023

Improve occurrenceID naming

Status: Open.

#89 In iobis/PacMAN-pipeline;

· pieterprovoost opened on Nov 16, 2023

High level RDP classification despite good BLAST hits

Status: Open.

#87 In iobis/PacMAN-pipeline;

· pieterprovoost opened on Nov 15, 2023