Repositories list

• ilayoutx

  Public
  Graph layout algorithms in Rust/Python

  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 15, 2025Aug 15, 2025

• iplotx

  Public
  Visualise networks and trees in Python, with style.

  visualizationpythongraphs+ 8networkxbiopythonnetworksmatplotlibplottingigraphscikit-bio+ 1

  Python

  •

  MIT License

  •0•4•3•0•Updated Aug 14, 2025Aug 14, 2025

• cell_atlas_approximations_HI

  Public
  Human interface for cell atlas approximations

  JavaScript

  •1•0•4•2•Updated Jun 30, 2025Jun 30, 2025

• cell_atlas_approximations_disease_API

  Public
  APIs for atlas approximations on human disease

  Jupyter Notebook

  •1•0•1•0•Updated May 23, 2025May 23, 2025

• cell_atlas_approximations_analysis

  Public
  Analysis of cell atlas approximations across organs and organisms.

  Python

  •0•0•0•0•Updated Mar 27, 2025Mar 27, 2025

• SATURN-xfer

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Mar 19, 2025Mar 19, 2025

• cell_atlas_approximations_NLP

  Public
  Natural language processor for cell atlas approximations

  JavaScript

  •0•0•4•0•Updated Mar 4, 2025Mar 4, 2025

• cell_atlas_approximations

  Public
  This is an umbrella repo describing cell atlas approximations

  0•2•0•0•Updated Feb 28, 2025Feb 28, 2025

• cell_atlas_approximations_API

  Public
  APIs for cell atlas approximations

  HTML

  •

  MIT License

  •2•0•7•3•Updated Feb 28, 2025Feb 28, 2025

• cell_atlas_approximations_compression

  Public
  Compression for cell atlas approximations

  Python

  •

  MIT License

  •2•0•9•0•Updated Feb 17, 2025Feb 17, 2025

• scquill

  Public
  Approximate any single cell data set, saving >99% of memory and runtime.

  Python

  •

  MIT License

  •1•0•2•0•Updated Dec 17, 2024Dec 17, 2024

• cell_atlas_approximations_disease_compression

  Public
  Approximation/compression scripts for atlas approximations on human disease

  Python

  •

  MIT License

  •1•0•0•0•Updated Sep 26, 2024Sep 26, 2024

• data-compression-and-APIs-for-cell-atlases

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Mar 29, 2023Mar 29, 2023

• apica

  Public
  API for compressed cell atlases

  Python

  •0•0•0•0•Updated Nov 29, 2022Nov 29, 2022

• igraph_docs_Adrian

  Public
  1•0•0•0•Updated Nov 19, 2022Nov 19, 2022

• treasuremap

  Public
  Treasuremap is a variation of UMAP that embeds a network with some fixed nodes.

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 17, 2022Nov 17, 2022

• northstar

  Public
  Single cell type annotation guided by cell atlases, with freedom to be queer

  clusteringscrna-seqsinglecell+ 3scrna-seq-analysiscell-atlasleidenalg

  Python

  •

  MIT License

  •6•25•1•0•Updated Jul 25, 2022Jul 25, 2022

• northstar_analysis

  Public
  Jupyter notebooks and scripts to perform atlas-based scRNA-seq analysis using Northstar

  Jupyter Notebook

  •2•1•0•0•Updated May 14, 2020May 14, 2020

• atlas_landmarks

  Public
  Single cell gene expression data, averaged or subsampled by cell type

  Python

  •1•0•1•0•Updated Oct 29, 2019Oct 29, 2019