Repositories list

• TreeProfiler

  Public
  tree visualization for tree + annotation data

  Python

  •

  GNU General Public License v3.0

  •4•39•4•0•Updated Jun 17, 2025Jun 17, 2025

• demultiplex-ont-illumina

  Public
  This pipeline is an in-house pipeline for demultiplexing Oxford Nanopore sequencing reads that have been multiplexed using Illumina-style dual indexes.

  Python

  •0•0•0•0•Updated May 26, 2025May 26, 2025

• metaCR

  Public
  A catalogue of 149,326 prokaryotic chemoreceptor genes from metagenomic and genomic data (GMGCv1 - http://gmgc.embl.de), with MCPsignal and LBD annotations. Includes ecological metadata from 13,174 metagenomes across 14 environments.

  0•1•0•0•Updated May 7, 2025May 7, 2025

• globalCR

  Public
  GlobalCR catalog offers a comprehensive resource of CR genes in both cultured and uncultured microorganisms. It includes taxonomic classification for each CR, predicted habitat distribution, and fine-grained subfamily classifications.

  0•0•0•0•Updated Jan 25, 2025Jan 25, 2025

• phylocloud_help

  Public
  0•0•0•0•Updated Jun 26, 2024Jun 26, 2024

• Programacion-para-bioinformatica

  Public
  Conceptos de Programación en BASH

  Shell

  •7•1•0•0•Updated Feb 2, 2023Feb 2, 2023

• nf-core_shotgun_cbgp

  Public
  Nextflow

  •

  MIT License

  •1•0•0•0•Updated Oct 6, 2022Oct 6, 2022

• GeCoViz_webapp

  Public
  GeCoViz web application. A platform for genomic context exploration with a phylogenetic perspective

  JavaScript

  •1•0•0•0•Updated Aug 30, 2022Aug 30, 2022

• novelfamilies

  Public
  CSS

  •1•0•0•0•Updated May 19, 2022May 19, 2022

• CRs

  Public
  Python

  •0•0•1•0•Updated Sep 2, 2021Sep 2, 2021

• DEEM_novel_fams

  Public
  CSS

  •1•0•0•0•Updated Aug 25, 2021Aug 25, 2021

• eggnog_experiments

  Public
  Python

  •1•0•0•1•Updated Aug 5, 2021Aug 5, 2021

• Progenomes

  Public
  Python package for Jorge´s JS visualization

  Python

  •1•0•0•0•Updated Nov 18, 2020Nov 18, 2020

• ete

  Public
  Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

  Python

  •

  GNU General Public License v3.0

  •220•0•0•0•Updated Oct 1, 2020Oct 1, 2020

• Neighbours_package

  Public
  Neighbours_package

  Python

  •0•0•0•0•Updated May 31, 2020May 31, 2020

• ete_gui

  Public
  a web-based GUI application of etetoolkit

  HTML

  •1•0•0•0•Updated Apr 22, 2020Apr 22, 2020

• snake_projects

  Public
  Workflows built using snakemake

  1•0•0•0•Updated May 30, 2019May 30, 2019