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    36 repositories

    • Tutorial_Long_Reads_Genome_Assembly

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • Course_SARS_CoV-2

      Public
      Repository of the course "Bioinformatics for SARS-CoV-2 analysis for beginners."
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • Curso_SARS-CoV-2

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Nov 27, 2024Nov 27, 2024

    • Genomic_surveillance

      Public
      Repository of the course "Genomic Surveillance of S. pneumoniae and S. agalactiae
      bioinformaticstutorialgenomic-surveillance
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Nov 27, 2024Nov 27, 2024

    • Vigilancia_genomica

      Public
      Repositorio del curso "Vigilancia genómica de S.pneumoniae y S. agalactiae"
      tutorialbioinfomaticsgenomic-surveillance
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • Microbiomas_en_R

      Public
      Análisis de microbiomas en R
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • Microbiome_Analysis_in_R

      Public
      Microbiome Analysis in R
      Jupyter Notebook
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • Tutorial_Introduccion

      Public
      Repositorio del Tutorial básico de bioinformática.
      bioinformaticstutorial
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • Introduction_tutorial

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 3, 2024Sep 3, 2024

    • metagenomics-communicable-diseases

      Public
      Tutorial #2
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 23, 2021May 23, 2021

    • HUMAnN2

      Public
      A HUMAnN2 container
      Dockerfile
      •0•0•0•0•Updated May 21, 2021May 21, 2021

    • stamp

      Public
      A stamp container
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 9, 2021May 9, 2021

    • python

      Public
      A Python 3 container.
      Dockerfile
      •0•0•0•0•Updated May 9, 2021May 9, 2021

    • ubuntu-dev

      Public
      An ubuntu image to work wherever Alpine doesn't.
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 9, 2021May 9, 2021

    • ubuntu

      Public
      A minimal ubuntu image for specific scenarios where alpine does not suffice.
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 9, 2021May 9, 2021

    • MetaPhlAn2

      Public
      A MetaPhlAn2 container.
      Dockerfile
      •0•0•0•0•Updated May 9, 2021May 9, 2021

    • cufflinks

      Public
      A cufflinks container
      0•0•0•0•Updated Mar 30, 2021Mar 30, 2021

    • food-safety-applied-transgenomics

      Public
      Tutorial 1
      0•0•0•0•Updated Mar 30, 2021Mar 30, 2021

    • seqmonk

      Public
      A SeqMonk container
      Dockerfile
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 9, 2021Mar 9, 2021

    • miniconda

      Public
      A mini conda container.
      Dockerfile
      •0•0•0•0•Updated Nov 21, 2020Nov 21, 2020

    • checkm

      Public
      A CheckM container.
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 21, 2020Nov 21, 2020

    • maxbin2

      Public
      A MaxBin2 container
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 20, 2020Nov 20, 2020

    • megahit

      Public
      A MEGAHIT container.
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 20, 2020Nov 20, 2020

    • r

      Public
      An R container
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 20, 2020Nov 20, 2020

    • mash

      Public
      A mash container
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 20, 2020Nov 20, 2020

    • nonpareil

      Public
      nonpareil container.
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 30, 2020Sep 30, 2020

    • trimmomatic

      Public
      Trimmomatic container
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 5, 2020Aug 5, 2020

    • seqtk

      Public
      Seqtk container.
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 5, 2020Aug 5, 2020

    • multiqc

      Public
      MultiQC container
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 5, 2020Aug 5, 2020

    • java

      Public
      Java container to be used as based for Java depedant containers.
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 5, 2020Aug 5, 2020