This repository contains three introductory and mandatory modules for the development of the courses Bioinformatics for SARS-CoV-2 analysis for beginners and Genomic Surveillance of S.pneumoniae and S. agalactiae.
Module 1: Introduction to Google Colaboratory
To get started, go to https://colab.research.google.com/.
On the Colab homepage, select "File" and then "Open notebook".
There is a tab for "GitHub"; select that tab and paste the following URL into the search bar under "Enter a GitHub URL or search by organization or user":
https://github.com/cabana-online/Introduction_tutorial
After a brief search, you will see the notebook:
01.Intro_to_colab.ipynb
Select it and you will see the notebook open.
To run the cells, you will need to sign in with your Google account (feel free to create an account). Using Colab is free.
Note: there are limitations in the free version, but they will not be reached in this course.
Module 2: Introduction to Notebooks and Unix/Linux
Go to https://colab.research.google.com/.
Select the repository
https://github.com/cabana-online/Introduction_tutorial
After a brief search, you will see the notebook:
02.Module_2_linux.ipynb
Select it and you will see the notebook open.
Module 3: Introduction to NGS Technologies
Go to https://colab.research.google.com/.
Select the repository
https://github.com/cabana-online/Introduction_tutorial
After a brief search, you will see the notebook:
03.Module_3_NGS.ipynb
Select it and you will see the notebook open.