Repositories list

• FundusAge

  Public
  Python

  •

  MIT License

  •0•1•0•0•Updated Aug 6, 2025Aug 6, 2025

• 2025_multistage_llm_sdoh

  Public
  A Multi-Stage LLM Framework for Suicide-Related SDoH Factor Extraction

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

• awesome-nlp-in-ebm

  Public
  A curated list of Natural Language Processing (NLP) research papers in the field of Evidence-Based Medicine (EBM).

  nlpevidence-based-medicine

  MIT License

  •1•1•0•0•Updated Jul 28, 2025Jul 28, 2025

• llm4proofreading

  Public
  Generative Large Language Models Trained for Detecting Errors in Radiology Reports

  Jupyter Notebook

  •

  MIT License

  •1•2•0•0•Updated Jul 3, 2025Jul 3, 2025

• 2024_MICCAI_CXRLT

  Public
  HTML

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jun 8, 2025Jun 8, 2025

• medtext

  Public
  Python

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  MIT License

  •1•2•1•0•Updated Apr 24, 2025Apr 24, 2025

• DermpathNet

  Public
  MIT License

  •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

• 2025_SYSEN_5630_ClinicalNLP_and_LLMs

  Public
  HTML

  •0•0•0•0•Updated Jan 1, 2025Jan 1, 2025

• 2025_HINF_5016_NLP_in_Health

  Public
  HTML

  •0•0•0•0•Updated Jan 1, 2025Jan 1, 2025

• longitudinal_transformer_for_survival_analysis

  Public
  [npj Digital Medicine] "Harnessing the power of longitudinal medical imaging for eye disease prognosis using Transformer-based sequence modeling" by Gregory Holste, Mingquan Lin, Ruiwen Zhou, Fei Wang, Lei Liu, Qi Yan, Sarah H Van Tassel, Kyle Kovacs, Emily Y Chew, Zhiyong Lu, Zhangyang Wang, & Yifan Peng

  deep-learningmedical-imagingsurvival-analysis+ 4longitudinal-dataglaucomamacular-degenerationfundus-image

  Python

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  MIT License

  •2•16•1•0•Updated Dec 18, 2024Dec 18, 2024

• 2024_WCM_CTSC_seminar_GenAI

  Public
  HTML

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• 2025_CTIV_5057_LLMs_in_CTS

  Public
  HTML

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• RadReportX

  Public
  Python

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  MIT License

  •0•0•0•0•Updated Nov 30, 2024Nov 30, 2024

• 2023_ICCV_CVAMD

  Public
  HTML

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  MIT License

  •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• 2024_AMIA_LLM_Tutorial

  Public
  HTML

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 9, 2024Nov 9, 2024

• 2024_AMIA_LLM_Panel

  Public
  HTML

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  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Nov 1, 2024Nov 1, 2024

• 2024_AMIA_Multimodal

  Public
  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• CTSA_GenAI_Survey

  Public
  MIT License

  •0•0•0•0•Updated Sep 28, 2024Sep 28, 2024

• 2024_commsmed_inconsistency_detection

  Public
  A Natural Language Processing Approach to Detect Inconsistencies in Death Investigation Notes Attributing Suicide Circumstances

  nlpsuicidenvdrs

  Python

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  MIT License

  •0•0•0•0•Updated Jul 27, 2024Jul 27, 2024

• redose

  Public
  MIT License

  •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

• report_generation_amia2022

  Public
  Python

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  MIT License

  •2•8•3•0•Updated Jun 20, 2024Jun 20, 2024

• AMD_prognosis_mlmi2022

  Public
  Python

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  MIT License

  •0•1•0•0•Updated May 23, 2024May 23, 2024

• suicide_sdoh

  Public
  Suicide-specific SDoH

  Python

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  MIT License

  •1•1•0•0•Updated May 23, 2024May 23, 2024

• PMC-CXR

  Public
  Python

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  MIT License

  •1•0•0•0•Updated May 23, 2024May 23, 2024

• MMSNet_mlmi2022

  Public
  Python

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  MIT License

  •0•2•0•0•Updated May 23, 2024May 23, 2024

• Fairness

  Public
  Python

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  MIT License

  •0•3•0•0•Updated May 23, 2024May 23, 2024

• negbio2

  Public
  High-performance tool for negation and uncertainty detection in radiology reports

  negationnegation-patternsnegbio+ 1radiology-report

  Python

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  Other

  •1•16•2•2•Updated May 3, 2024May 3, 2024

• 2023_AMIA_LLM

  Public
  HTML

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

• CXRFairness

  Public
  Python

  •0•2•0•0•Updated Nov 26, 2023Nov 26, 2023

• bioc

  Public
  Data structures and code to read/write BioC XML and Json.

  jsonxmlwriter+ 3readerbiocbionlp

  Python

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  MIT License

  •11•33•1•0•Updated Aug 21, 2023Aug 21, 2023