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    10 repositories

    • .github

      Public
      0•0•0•0•Updated Jul 19, 2025Jul 19, 2025

    • mpox1b_importation_risk

      Public
      Quantify importation risk of mpox clade 1b.
      R
      •
      MIT License
      •1•0•0•0•Updated Oct 27, 2024Oct 27, 2024

    • projection_of_mpox_in_Asia

      Public
      Project human mpox cases in Asian countries.
      Julia
      •
      MIT License
      •1•0•0•0•Updated Apr 19, 2024Apr 19, 2024

    • waning_ve_estimation_multivariant

      Public
      Underlying code for Murayama et al. (2023) "Estimation of waning vaccine effectiveness from population-level surveillance data in multi-variant epidemics", published in Epidemics.
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Nov 22, 2023Nov 22, 2023

    • mpox_global

      Public
      Underlying code for Jung & Miura et al. "Dynamic landscape of mpox importation risks driven by heavy-tailed sexual contact networks among men who have sex with men in 2022: a mathematical modeling study"
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • schooldynamics_FluMatsumoto14-15

      Public
      Transmission patterns of seasonal influenza and pandemic management strategies
      Julia
      •
      MIT License
      •2•0•0•0•Updated Oct 12, 2023Oct 12, 2023

    • MPX_depletion_susceptibles

      Public
      Underlying code for Murayama et al. (2022) "Accumulation of immunity in heavy-tailed sexual contact networks shapes mpox outbreak sizes"
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jul 20, 2023Jul 20, 2023

    • mpox_emergenceJapan

      Public
      Underlying code for Endo et al. "Mpox emergence in Japan: risks of establishment in Asia and the global resurgence" https://www.researchsquare.com/article/rs-2548920/v2
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Apr 5, 2023Apr 5, 2023

    • monkeypox_heavytail

      Public
      Underlying code for Endo et al. "Heavy-tailed sexual contact networks and the epidemiology of monkeypox outbreak in non-endemic regions, May 2022."
      Julia
      •
      MIT License
      •4•0•0•0•Updated Aug 11, 2022Aug 11, 2022

    • HHstudy_FluMatsumoto2014-15

      Public
      Household study on influenza outbreak in primary schools in Matsumoto city, Japan, 2014-15
      R
      •
      MIT License
      •2•0•0•0•Updated Apr 13, 2022Apr 13, 2022