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@RIVM-IIV-Microbiome RIVM-IIV-Microbiome

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    8 repositories

    • biomeUtils

      Public
      biomeUtils is Module-01 of the RIVM-ToolBox. R pkg with common utilities for microbiome research done at the RIVM.
      microbiomemicrobiotamicrobiome-analysis
      R
      •
      Other
      •0•3•1•0•Updated Jul 10, 2023Jul 10, 2023

    • VEGA-2021

      Public
      Codes and data for VEGA metagenomics study
      R
      •0•0•0•0•Updated Oct 14, 2022Oct 14, 2022

    • biomeStats

      Public
      biomeStats is Module-02 of the RIVM-ToolBox. R pkg with tools for microbiome association analysis research done at the RIVM. Development Phase: Active Development
      R
      •
      Other
      •0•0•1•0•Updated Sep 6, 2022Sep 6, 2022

    • biomeViz

      Public
      biomeViz is Module-03 of the RIVM-ToolBox. R pkg with data visualization tools for microbiome research done at the RIVM. . Development Phase: Active Development
      microbiomemicrobiotavisualizationdata-visualization
      R
      •
      Other
      •0•1•0•0•Updated Jul 18, 2022Jul 18, 2022

    • ILI-Respiratory-Microbiota-2021

      Public
      Associations and recovery dynamics of the nasopharyngeal microbiota during influenza-like illness in the aging population
      R
      •
      MIT License
      •1•3•0•0•Updated Feb 8, 2022Feb 8, 2022

    • RIVM-workflows

      Public
      Some basic workflows that are work in progress
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 16, 2021Nov 16, 2021

    • modularDADA2

      Public
      Wrapper around the dada2 workflow to process 16S rRNA gene sequencing data at RIVM-IIV
      HTML
      •
      Other
      •0•0•0•0•Updated Sep 8, 2021Sep 8, 2021

    • RIVM-IIV-Microbiome

      Public
      0•0•0•0•Updated Apr 14, 2021Apr 14, 2021