Repositories list

• sc3D

  Public
  Spatial Single Cell transcriptomic library

  Jupyter Notebook

  •

  MIT License

  •1•18•0•0•Updated Oct 17, 2025Oct 17, 2025

• tapenade

  Public
  Python

  •

  MIT License

  •0•12•1•1•Updated Oct 9, 2025Oct 9, 2025

• LineageTree

  Public
  Module to read and "work" with lineage trees

  Jupyter Notebook

  •

  MIT License

  •3•8•0•0•Updated Sep 30, 2025Sep 30, 2025

• .github

  Public
  0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

• registration-tools

  Public
  Python

  •1•3•0•2•Updated Sep 25, 2025Sep 25, 2025

• edist-temptative

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

• python-mastodon-importer-light

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Jul 25, 2025Jul 25, 2025

• napari-3D-registration

  Public
  A plugin to do 3D registration

  Python

  •

  MIT License

  •1•2•0•0•Updated Jul 8, 2025Jul 8, 2025

• napari-sc3D-viewer

  Public
  A plugin to visualise 3D spatial single cell omics

  python3dspatial-transcriptomics+ 2napari-pluginnapari

  Python

  •

  MIT License

  •2•21•0•0•Updated Jun 17, 2025Jun 17, 2025

• napari-tapenade-processing

  Public
  Python

  •

  MIT License

  •0•2•0•0•Updated Jun 13, 2025Jun 13, 2025

• napari-file2folder

  Public
  Python

  •

  MIT License

  •0•1•0•0•Updated Jun 12, 2025Jun 12, 2025

• GabrielGraph

  Public
  Python

  •

  MIT License

  •0•2•0•0•Updated Jun 12, 2025Jun 12, 2025

• moransi

  Public
  Python

  •

  MIT License

  •0•2•0•0•Updated May 23, 2025May 23, 2025

• Stardist-watershed

  Public
  Python

  •0•0•0•0•Updated May 6, 2025May 6, 2025

• attestation

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 24, 2025Apr 24, 2025

• napari-manual-registration

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•3•2•0•Updated Mar 27, 2025Mar 27, 2025

• napari-spatial-correlation-plotter

  Public
  Python

  •

  MIT License

  •0•5•0•0•Updated Dec 10, 2024Dec 10, 2024

• astec

  Public
  astec

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

• embryo_binary_segmentation

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Sep 2, 2024Sep 2, 2024

• Two-Channels-Correlation

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated May 31, 2024May 31, 2024

• CenTuri-Course

  Public
  Python Course

  pythoncourse

  Jupyter Notebook

  •

  MIT License

  •5•2•0•0•Updated Feb 21, 2024Feb 21, 2024

• Simple-Track-Builder

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 15, 2023Nov 15, 2023

• napari-vectorflow

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Jun 14, 2023Jun 14, 2023

• napari-obj

  Public
  a plugin to read .obj files in napari

  Python

  •

  MIT License

  •0•0•0•0•Updated Jun 14, 2023Jun 14, 2023

• placozoa_tracking

  Public
  Jupyter Notebook

  •4•0•0•0•Updated Jan 15, 2023Jan 15, 2023

• IO

  Public
  python

  Python

  •1•1•0•0•Updated Oct 27, 2022Oct 27, 2022

• paste

  Public
  Probabilistic Alignment of Spatial Transcriptomics Experiments

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •19•0•0•0•Updated Jul 19, 2022Jul 19, 2022

• paste_reproducibility

  Public
  Jupyter Notebook

  •4•0•0•0•Updated Jul 5, 2022Jul 5, 2022

• covid-analysis

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 22, 2022Feb 22, 2022