Paste reproducibility

Code to reproduce the analysis and figures in the paper Alignment and Integration of Spatial Transcriptomics Data. The Paste python package is located here.

Datasets

• All preprocessed datasets can be found on zenodo.
• For convenience there is a script called download_data.sh that will download all the relevant files to the data directory in the correct hierarchy.

Main figures

• Figure 2
  • 2a
  • 2b
  • 2c
• Figure 3
• Figure 4
• Figure 5
• Figure 6

Extended Data figures

• ED Figure 1
• ED Figure 2
• ED Figure 3
• ED Figure 4
• ED Figure 5
• ED Figure 6
• ED Figure 7
• ED Figure 8
• ED Figure 9

Supplementary figures

• Figure S2
• Figure S3
• Figure S4
• Figure S5
• Figure S6
• Figure S7
• Figure S8
• Figure S9
• Figure S10
• Figure S11
• Figure S12
• Figure S13
• Figure S14
• Figure S15
• Figure S16
• Figure S17
• Figure S18
• Figure S19
• Figure S20
• Figure S21
• Figure S22
• Figure S23
• Figure S24
• Figure S25
• Figure S26
• Figure S27
• Figure S28
• Figure S29
• Figure S30