Test

change cytonorm and cycombine clustering to use lineage markers (#54) #170

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Job	Run time
test / List components to test	30s
test / Test (emd, metrics, src/metrics/emd/config.vsh.yaml, src/metrics/emd/, python_script, metrics/emd)	2m 51s
test / Test (n_inconsistent_peaks, metrics, src/metrics/n_inconsistent_peaks/config.vsh.yaml, src/metric...	2m 26s
test / Test (average_batch_r2, metrics, src/metrics/average_batch_r2/config.vsh.yaml, src/metrics/averag...	2m 5s
test / Test (shuffle_integration, control_methods, src/control_methods/shuffle_integration/config.vsh.ya...	1m 29s
test / Test (no_integration, control_methods, src/control_methods/no_integration/config.vsh.yaml, src/co...	2m 23s
test / Test (shuffle_integration_by_batch, control_methods, src/control_methods/shuffle_integration_by_b...	1m 50s
test / Test (perfect_integration, control_methods, src/control_methods/perfect_integration/config.vsh.ya...	2m 48s
test / Test (shuffle_integration_by_cell_type, control_methods, src/control_methods/shuffle_integration_...	1m 24s
test / Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...	2m 16s
test / Test (cycombine_nocontrols, methods, src/methods/cycombine_nocontrols/config.vsh.yaml, src/method...	2m 57s
test / Test (harmonypy, methods, src/methods/harmonypy/config.vsh.yaml, src/methods/harmonypy/, python_s...	2m 45s
test / Test (combat, methods, src/methods/combat/config.vsh.yaml, src/methods/combat/, python_script, me...	1m 33s
test / Test (limma_remove_batch_effect, methods, src/methods/limma_remove_batch_effect/config.vsh.yaml, ...	1m 58s
test / Test (gaussnorm, methods, src/methods/gaussnorm/config.vsh.yaml, src/methods/gaussnorm/, r_script...	2m 42s
test / Test (cytonorm_controls, methods, src/methods/cytonorm_controls/config.vsh.yaml, src/methods/cyto...	4m 20s
	36m 17s