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Add scGPT #8

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Merged
merged 7 commits into from
Nov 8, 2024
Merged

Add scGPT #8

merged 7 commits into from
Nov 8, 2024

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lazappi
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@lazappi lazappi commented Nov 5, 2024 •
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Describe your changes

Adds the scGPT foundation model as a method. This implementation follows the zero-shot integration tutorial.

Checklist before requesting a review

  • I have performed a self-review of my code

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Bug fixes

  • Proposed changes are described in the CHANGELOG.md

  • CI Tests succeed and look good!

@lazappi lazappi requested a review from rcannood November 5, 2024 14:34
KaiWaldrant
KaiWaldrant approved these changes Nov 8, 2024
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LGTM!

@rcannood rcannood merged commit 5377801 into main Nov 8, 2024
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lazappi added a commit that referenced this pull request Nov 22, 2024
@lazappi
Merge remote-tracking branch 'origin/main' into feature/no-ref/add-sc…
5ece7e2 
…PRINT

* origin/main:
  fix repository name
  Migrate from core to openproblems (#11)
  fix broken urls
  fix wf
  Pre-filter batches in hvg overlap metric (#9)
  Adjust resources (#10)
  Add scGPT (#8)
  Add UCE method (#7)
  Add Geneformer (#6)
  fix submodule
  Update common submodule
@lazappi lazappi deleted the feature/no-ref/add-scGPT branch November 22, 2024 12:34
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@KaiWaldrant KaiWaldrant KaiWaldrant approved these changes

@rcannood rcannood Awaiting requested review from rcannood

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@lazappi @KaiWaldrant @rcannood