Add batch_hvg var column to solution #31
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lazappi
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Jan 27, 2025
* origin/main: (28 commits) Adjust pyliger dependencies (openproblems-bio#43) Minor run adjustments (openproblems-bio#44) Fix reference in task description (openproblems-bio#45) Remove grouping bottleneck (openproblems-bio#42) Retry with single core in geneformer (openproblems-bio#41) Adjustments based on benchmark run (openproblems-bio#39) Update compute environment (openproblems-bio#35) Replace "+" in batch names for liger (openproblems-bio#37) Update common submodule to commit 62268aa (openproblems-bio#38) Adjust features filter in scPRINT (openproblems-bio#36) minor tweaks to the cell cycle component (openproblems-bio#34) Update common submodule to commit a2e845 (openproblems-bio#33) Increase time resources (openproblems-bio#27) GPU adjustments (openproblems-bio#32) Add batch_hvg var column to solution (openproblems-bio#31) Add fine-tuned scGPT (openproblems-bio#17) Bump scIB to v1.1.7 (openproblems-bio#30) Pin scPRINT version (openproblems-bio#25) Increase UCE memory tag (openproblems-bio#24) Add exit codes helper file (openproblems-bio#26) ...
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Describe your changes
Store the genes used to subset datasets as a
varcolumn in the solution for use by metrics.Checklist before requesting a review
I have performed a self-review of my code
Check the correct box. Does this PR contain:
Proposed changes are described in the CHANGELOG.md
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