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Pull requests: nf-core/modules

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Pull requests list

Bump OpenMS version, update snapshots
#8434 opened May 11, 2025 by jonasscheid Loading…
2 of 17 tasks
shellcheck: Run on .nf scripts
#8433 opened May 10, 2025 by zeehio Loading…
2 of 17 tasks
Add:rnaquast
#8432 opened May 10, 2025 by vagkaratzas Loading…
11 of 17 tasks
2
Update BAM_MARKDUPLICATES_PICARD take docs
#8431 opened May 10, 2025 by nick-youngblut Loading…
2 of 17 tasks
feat: add formula and contrasts to limma
#8429 opened May 9, 2025 by atrigila • Draft
17 tasks
Swap spatyper to nf-test
#8428 opened May 9, 2025 by SPPearce Loading…
1
Update semibin/singleeasybin
#8426 opened May 9, 2025 by SPPearce Loading…
1
6
Update to fcs version and tests
#8418 opened May 8, 2025 by DLBPointon Loading…
@DLBPointon
Add gatk4 countreads
#8415 opened May 8, 2025 by randombenj Loading…
14 of 17 tasks
Automate wave meta files
#8414 opened May 7, 2025 by edmundmiller • Draft
@edmundmiller
🐍 add aracne3 and viper modules
#8402 opened May 6, 2025 by ddomenico • Draft
5 of 14 tasks
1
create nf-core samtools/viewflagstat module
#8399 opened May 6, 2025 by Mapathefaye Loading…
17 tasks
2
PRELOADKRAKENUNIQ: Fix preloading mechanism to prevent (partial) double loading of DB
#8397 opened May 6, 2025 by muniheart Loading…
16 tasks
9
Output interval_list file to channel for downstream processing
#8394 opened May 5, 2025 by percyfal Loading…
17 tasks
1
Add fasta to picard/collectalignmentsummarymetrics
#8392 opened May 5, 2025 by randombenj Loading…
14 of 17 tasks
1
Run Nextflow lint in pre-commit
#8391 opened May 4, 2025 by edmundmiller Loading…
@edmundmiller
12
Allow graphtyper/genotype to use compressed references Ready for Review
#8387 opened May 1, 2025 by zachary-foster Loading…
7
chore(deps): update biocontainers/chewbbaca docker tag to v3.3.10
#8386 opened May 1, 2025 by renovate bot Loading…
2 tasks
chore(deps): update biocontainers/checkv docker tag to v1.0.3
#8385 opened May 1, 2025 by renovate bot Loading…
2 tasks
chore(deps): update biocontainers/busco docker tag to v5.8.3
#8384 opened May 1, 2025 by renovate bot Loading…
2 tasks
Add new module Quilt2
#8375 opened Apr 29, 2025 by LouisLeNezet • Draft
17 tasks
Add wishlist functionality to manage issues
#8369 opened Apr 25, 2025 by famosab Loading…
17 tasks
4
Fix cellrangerarc/mkfastq gz stub
#8354 opened Apr 23, 2025 by ignatiusm Loading…
17 tasks
1
1
nf-test migration for cellrangerarc/mkfastq
#8353 opened Apr 22, 2025 by ignatiusm • Draft
17 tasks
1
Update GNU
#8349 opened Apr 22, 2025 by DLBPointon Loading…
@DLBPointon
14
ProTip! Exclude everything labeled bug with -label:bug.