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Releases: nextflow-io/nextflow

Version 23.08.0-edge

05 Aug 15:13
ace32d0
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Version 23.08.0-edge Pre-release
Pre-release
  • Add -value option to config command (#4142) [57e3100]
  • Add deleteTasksOnCompletion to Azure Batch configuration (#4114) [b14674d]
  • Add Tower logs checkpoint (#4132) [71dfecc]
  • Allow use virtual threads in Wave client [dd32f80]
  • Allow workflow entry from module import (#4128) [51f5c84]
  • Disable cache backup/restore if cloudcache is used (#4125) [46e828e]
  • Document behavior of withName selector with included aliases (#4129) [8b7e3d4]
  • Fix Option fixOwnership traverse parent directories [f2a2ea3]
  • Fix Redirection http redirection across different hosts [fcdeec0]
  • Fix Wave disable flag [8579e7a]
  • Fix bug with K8s resource labels (#4147) eu-west-1[3f4b855]
  • Fix glob resolution for remove files [19a72c4]
  • Fix incorrect error message on missing comma (#4085) eu-west-1[a59af39]
  • Fix missing changelog for version 23.07.0-edge eu-west-1[9a33e93]
  • Fix strict mode docs (#4150) [6b46b50]
  • Improve plugin docs (#3957) [22638d4]
  • Improve Wave config logging [547fad6]
  • Improve TaskPollingMonitor logging [077ed5d]
  • Improve Wave and Fusion docs (#4149) [d2229bd]
  • Increase Wave client max attempts [fe5dd49]
  • Remove module all components import [a6d08c0]
  • Restore Tower CacheManager for backward compatibility [6d26907]
  • Bump amazoncorretto:17.0.8 [00eb145]
  • Bump nf-wave@0.11.1 [78e4b27]
  • Bump nf-tower@1.6.0 [41c8c16]
  • Bump nf-azure@1.2.0 [5f33ac1]
  • Bump nf-amazon@2.1.1 [981315a

Version 23.07.0-edge

22 Jul 16:14
fd4ff04
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Version 23.07.0-edge Pre-release
Pre-release

23.07.0-edge - 23 Jul 2023

  • Add CPU model name to trace files and traceRecord (#3946) [e0d91bf]
  • Add ability to disable CLI params type detection [9a1c584]
  • Add cloudcache plugin (#4097) [ac90cc2]
  • Add missing header to Wave container await [d39866e]
  • Add remote bin support for TES in a workdir (#3990) [8a22168]
  • Add retry logic to wave image await [9fc1d3b]
  • Add rule to build Nextflow docker image for ARM (#4020) [705d55f]
  • Add support for AWS SSO credentials provider (#4045) [53e33cd]
  • Add support for Wave container freeze [9a5903e]
  • Add support legacy Wave retry [73a1e7d]
  • Allow SLURM executor option --mem-per-cpu (#4023) [96c04e3]
  • Allow disabling the Wave requirement when Fusion is enabled [9180d63]
  • Disable Singularity and Apptainer home mount by default (#4056) [a0ee465]
  • Document NXF_WRAPPER_STAGE_FILE_THRESHOLD environment variable (#4113) [ci skip] [bda4756]
  • Fix AzFileSystem retry policy [ba9b6d1] [c2f3cc9]
  • Fix Improve error message for invalid Azure URI [0f4d886]
  • Fix Treat HTTP headers as case insensitive (#4116) [97fd335]
  • Fix invalid detection of hierarchical namespace stub blobs as files (#4046) [ce06c87]
  • Fix stage script in Fusion script launcher (#4109) [0933f47]
  • Ignore accelerator type for AWS Batch (#4043) [263ecca]
  • Implement Weblog feature as an external plugin [f9f2c33]
  • Improve "Unexpected input: '{'" error message (#4122) [ef9d3cf]
  • Improve Azure retry logging [de58697]
  • Improve description of channels and channel types (#4120) [8975734]
  • Improve handling Wave server errors [84f7a61]
  • Increase Azure min retry delay to 250ms [2e77e5e]
  • Remove default arch from wave request [f0e5c0c]
  • Remove logging of report JSON data (#4098) [099e503]
  • Wait for all child processes in nxf_parallel (#4050) [60a5f1a]
  • Bump Groovy 3.0.18 [207eb53]
  • Bump micromamba 1.4.9 [6307f9b]
  • Bump nf-amazon@2.1.0 [5746474]
  • Bump nf-azure@1.1.2 [e1512f6]
  • Bump nf-azure@1.1.3 [27e7f66]
  • Bump nf-azure@1.1.4 [1895efc]
  • Bump nf-cloudcache@0.1.0 [cb6242c]
  • Bump nf-ga4gh@1.1.0 [f98feb7]
  • Bump nf-google@1.8.1 [6aede7c]
  • Bump nf-tower@1.5.15 [3278d79]
  • Bump nf-wave@0.11.0 [2998db5]

Version 23.06.0-edge

14 Jun 21:48
cb95920
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Version 23.06.0-edge Pre-release
Pre-release
  • Add Wave containers reports (preview) [9d9e275]
  • Add disk resource with type option for Google batch (#3861) [166b363]
  • Add httpConnectTimeout and httpReadTimeout to Google options (#3974) [49fa15f]
  • Add plugin cmd help description [d3788f9]
  • Add retry policy on Az blob operations [295bc1f]
  • Add retry policy to Wave HTTP client [1daebee]
  • Add support for AWS SES as mail sending provider [df85d44]
  • Add support for arch auto-detection to Wave [7b5fdaf]
  • Add wave.httpClient.connectTimeout config option [dd999a3]
  • Clarify tip about groupTuple size and groupKey (#3949) [e60d327]
  • Consolidate Wave retryPolicy options [7d7464f]
  • Enhanced support for Spack + Wave (#3998) [63ac03b]
  • Fix Google Batch default instance family types (#3960) [b5257cd]
  • Fix S3 path normalization [b75ec44]
  • Fix access to public S3 bucket when no creds are provided (#3992) [cf8ba46] [680f0a9]
  • Fix containerOptions when using Fusion [dcde7b7]
  • Fix dump pretty print not to modify input (#3955) [46c17ee]
  • Fix invalid machine type setting when no valid machine type is found (#3961) [5eb9397]
  • Fix matching symlink files [d63af78]
  • Fix missing options for JsonSplitter creation (#3958) [f991fe9]
  • Fix non-deterministic null container engine error [f227f2e]
  • Fix packing all, including Wave [735b8d9]
  • Fix static compiler errors [f48a473]
  • Improve documentation on Nextflow scripts (#3953) [80050c0]
  • Minor change in Wave config [4da0442]
  • Prevent null exit code when Google batch is unable to access exit status [f68a39e]
  • Refactor Conda and Spack support for Wave to Java [36b9e22]
  • Remove --no-home default option from charliecloud builder (#3956) [915074a]
  • Update workflow.revision max length to match the one in Tower (#4010) [1433a90]
  • Bump amazocorretto:17.0.7 [c8aa121]
  • Bump azure-storage-blob:12.22.1 [2a36fa7]
  • Bump nf-wave@0.10.0 [0872fba]
  • Bump nf-tower@1.5.14 [64bf311]
  • Bump nf-google@1.8.0 [7ca7d80]
  • Bump nf-azure@1.1.1 [afd368c]
  • Bump nf-amazon@2.0.1 [58c332a]

Version 23.04.2

08 Jun 10:01
5b5b579
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  • Fix non-deterministic null container engine error [f93221a]
  • Add retry policy to Wave client [2f1532f]
  • Fix wave build docs [34a7302]
  • Bump nf-wave@0.8.3 [350201b]

Version 23.05.0-edge

15 May 04:59
0781988
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Version 23.05.0-edge Pre-release
Pre-release

23.05.0-edge - 15 May 2023

  • Add support for custom custom root directory to resolve relative paths (#3942) [f06bb1f]
  • Add arch directive support for Spack (#3786) [62dfc48]
  • Add clone deep option to run and pull commands [b44b645]
  • Add fusion.exportStorageCredentials option [acb6aed]
  • Add groovy-yaml to core runtime [003e1f7]
  • Add missing test env variables to CI build [a0e501b]
  • Add splitJson Operator (#3830) [4f58f69]
  • Add support for Java 20 [3788a68]
  • Add support for time directive in Azure Batch (#3869) [5c11a0d]
  • Add support for the Spack recipes to Wave build (#3636) [b03cbe7]
  • Add Preview support for virtual threads (#3871) [5c42904]
  • Convert docs to Markdown (#3196) [3cad402]
  • Deprecate DSL1 syntax for tap operator (#3004) [2be0edf]
  • Enable static compilation to missing classes (#3906) [c3c4b2f]
  • Fix -with-conda option in the docs (#3867) [9b350ba]
  • Fix AWS SSE env propagation to Fusion [e24608c]
  • Fix Apptainer rendering by removing superflous space [36607ed]
  • Fix Azure jobs correctly deleted after completion (#3927) [b173a98]
  • Fix Azure pool creation when using scaling formula (#3868) [79984a8]
  • Fix DSL2 support in nextflow console (#3864) [0253f8d]
  • Fix K8s handling PodUnschedulableException (#3938) [5b756c6]
  • Fix interval channel factory (#3848) [d001e4c]
  • Fix invalid warning on func import (#3807) [bb83696]
  • Fix minor typo in nextflow subcommand (#3853) [dd3be3d]
  • Fix misleading error message on NoSuchFileException [f3dceba]
  • Fix missing SAS token fusion env for Azure [4301502]
  • Fix problem args were not correctly represented in debug yaml (#3904) [eeb4b5c]
  • Fix string comparison in S3 client (#3875) [9344d29]
  • Fix use of remote dir with local exec statement [850bc3d]
  • Fix Quote Singularity/Apptainer env values [586417a]
  • Improve handling default out param [9147197]
  • Improve plugin test detection [29794bf]
  • Improve plugin updater err handling [f3d72f2]
  • Improve task out redirect remove the use of mkfifo (#3863) [efedec7]
  • Improve Use Docker stop instead of docker kill [32e6fd8]
  • Improve Use separate script for long stage/unstage commands (#3851) [4343e33]
  • Increase Azure default maxRetries to 10 [a017139]
  • Keep plugins-info content sorted [d5552ee]
  • Minor change on Docker-spack templates [e0e24bd]
  • Refactor the AWS configuration (#3498) [a74e42d]
  • Remove Channel.from in favor of Channel.of from tests and docs (#3670) [aa8b72f]
  • Rename AmazonS3Client to S3Client [cc59596]
  • Rename com.upplication.s3fs package to nextflow.cloud.aws.nio [a2f3bb2]
  • Run build CI tests on push to branches starting with test* or dev* (#3852) [7032e17]
  • Security fixes [973b7be]
  • Support enums in cache helper (#3901) [e4b977a]
  • Bump slf4j 2.0.7 and logback 1.4.6 [d7eae86]
  • Bump JGit 6.5 and use depth 1 when cloning repos [eda0845]
  • Bump aws-java-sdk-s3:1.12.429 [465171f]
  • Bump fusion 2.2 [f1ebe29]
  • Bump groovy 3.0.17 [cfe4ba5]
  • Bump gson:2.10.1 [be55568]
  • Bump micromamba:1.4.2 [334df1e]
  • Bump nf-wave@0.9.0 [7d6d010]
  • Bump nf-tower@1.5.13 [b06ffd0]
  • Bump nf-google@1.7.4 [2e0a15c]
  • Bump nf-ga4gh@1.0.6 [0c8fd7d]
  • Bump nf-console@1.0.6 [a733b81]
  • Bump nf-codecommit@0.1.5 [12edf0e]
  • Bump nf-amazon@2.0.0 [69b6edd]
  • Bump nf-azure@1.1.0 [d05d51b]

Version 23.04.1

15 Apr 07:51
2769e60
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Version 22.10.8

15 Apr 10:32
82b917e
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  • Security fixes [fc2627b]
  • Add support for testing custom plugin uri [718d456]
  • Improve plugin updater err handling [8404208]
  • Improve plugin test detection [ci fast] [e6c60a6]
  • Bump nf-google@1.4.6 [26b01b8]
  • Bump nf-wave@0.5.5 [2a886fe]
  • Bump nf-ga4gh@1.0.5 [b8769f1]
  • Bump nf-tower@1.5.7-patch0 [89d902e]
  • Bump nf-azure@0.14.3 [9b0f4bf]
  • Bump nf-amazon@1.11.5 [f7aaddc]
  • Bump amazoncorretto@17.0.6 [7898cc0]

Version 23.04.0

01 Apr 21:52
77c286e
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  • Add several names to the name generator feat:(#3790) [dfa2f6c]
  • Add support for Fusion to Azure Batch executor (#3209) [3d3cbfa]
  • Add support for testing custom plugin uri [227910a]
  • Add warnings for Azure named pools (#3819) [a2c71ac]
  • Enable new pid namespace with Singularity & Apptainer [3601b01]
  • Fix NoSuchMethodError String.stripIndent with Java 11 [308eafe]
  • Fix issue checking Google Batch script launcher type [39c3a51]
  • Fix resolution of module resources [2c5a687]
  • Fix Relax caching across task retries [840e843]
  • Fix Java version for tests [7ce05c1]
  • Remove extra context from workflow error message [38c8bd3]
  • Revert "Enable Fusion on Google Batch tests" [2ba7ea5]
  • Bump micromamba 1.4.1 [ec1439e]
  • Bump nf-amazon@1.16.1 [0f98b24]
  • Bump nf-azure@1.0.0 [e1732be]
  • Bump nf-google@1.7.2 [99477f7]
  • Bump nf-wave@0.8.1 [939195b]
  • Bump nf-tower@1.5.11 [b7b5d4c]

From previous edge releases

23.03.0-edge - 19 Mar 2023

  • Add Azure batch pool virtualNetwork option (#3723) [e3917b8]
  • Add basePackages option to Wave config [7e82781]
  • Add error message for missing container image with Google Batch (#3747) [6419e68]
  • Add notifyFilePublish optional source argument (#3737) [a65a9ff]
  • Add retry strategy on Bash wrapper write logic [1e38274]
  • Add support for AWS S3 Glacier Retrieval Tier (#3680) [fab6bd5]
  • Add sync invocation on job completion (#3678) [e29c4e4]
  • Add workflowId to Wave request [025ff9d]
  • Add Clone result list objects before output binding [3876208]
  • Add plugins option to kuberun command (#3766) [6515294]
  • Fix Google Batch logging exception [d7e38e9]
  • Fix Java Matcher serialization [6aecc4e]
  • Fix Logger failure type detection [f1b89c1]
  • Fix Orphaned processes when using Singularity [7236f83]
  • Fix groupTuple with mismatching tuple cardinality [1d32e2c]
  • Fix special chars escaping in container env [b93634e]
  • Fix commit revision type for Azure DevOps repos (#3721) [fb71767]
  • Improve DAG API (#3703) [21afb35]
  • Improve Wave docs [7299dac]
  • Improve fair directive docs (#3677) [7ca7520]
  • Improve transpose and groupTuple examples in the docs (#3685) [7870dfc]
  • Increase pwd obfuscation min length [ba23d03]
  • Make GroupKey cloneable (#3738) [0760b0f]
  • Prepare Nextflow for the CWS Plugin (#3727) [fd8bf70]
  • Remove DNAnexus page from docs (#3695) [fa58c18]
  • Remove outdated FAQ page from docs (#3683) [e59c7fb]
  • Remove unused classes [9fa8d75]
  • Update Azure VM sizes (#3751) [1d06e9a]
  • Enable Fusion on Google Batch tests [2f1b109]
  • Bump groovy 3.0.16 [d3ff5dc]
  • Bump nf-wave@0.8.0 [aa1b065]
  • Bump nf-google@1.7.1 [2aaaf2a]
  • Bump nf-azure@0.16.0 [f358b00]
  • Bump nf-amazon@1.16.0 [2395187]

23.02.1-edge - 26 Feb 2023

  • Add Fusion logs and tags config [0919207]
  • Add support for NXF_DEBUG to K8s task handler [828583d]
  • Add support for Mamba HTTP based lock files [7fe88c8]
  • Add container name validation [c3b6d9a]
  • Add Fusion for Google storage docs [34fcfe0]
  • Improve K8s auth token discovery [44f8cc0]
  • Bump nf-wave@0.7.2 [1c697ab]
  • Bump amazoncorretto:17.0.6 [a33a6f4]

23.02.0-edge - 21 Feb 2023

  • Add Fusion support for Google Batch (#3577) [d5fbab4]
  • Add Header provider to Google Batch client [2097992]
  • Add Wave integration tests [c5faf97]
  • Add errorStrategy validation [954cd92]
  • Add Java install recommendations to docs (#3617) [7e9bee1]
  • Add nextflow tags to AWS Batch job def [b465ac5] [BREAKING]
  • Add readOnlyInputs option for CharliecloudBuilder (#3590) [8ae001f]
  • Add refresh token to Wave request [41510e8]
  • Add requirements for container images to run with Nextflow (#3586) [7af1cb6]
  • Add support for Fusion to Slurm and LSF executors (#3516) [fbc95e6]
  • Add support for Fusion tags (#3609) [8385ec2] [BREAKING]
  • Add support for the Spack package manager (#3580) [a5df62f]
  • Add the fcp tool option to file copy strategy (#3556) [2a22425]
  • Add Fusion integration test
  • Add Wave + Fusion test with Google Batch [b541c06]
  • Add support for entryless Fusion configuration and Singularity support (#3584) [34a2773]
  • Improve Fusion config [a1d0846]
  • Ignore resource directives if -l option is specified in PBS executor (#3015) [28a6796]
  • Improve K8s securityContext support [3f76240]
  • Improve AWS Batch error logging [8f4884c]
  • Improve secrets docs [9a3b421]
  • Improve Wave debug-task plugin command [cf3fd74]
  • Improve Wave logging [fced376]
  • Increase Wave token duration to 30 mins [e1a712c]
  • Fix -with-apptainer cli option (#3621) [8c9588f]
  • Fix GH action tests step [bb890d9]
  • Fix Spack failing test [868374d]
  • Fix Tower doc links, fix typos (#3647) [1278e1a]
  • Fix Wave cli messages [10cf414]
  • Fix collectFile cache over remote storage [762ba19]
  • Fix output env var tokenize [40d5673]
  • Fix plugin install version [59e9a91]
  • Fix race condition on Wave requests [f57fae2]
  • Fix serialization of S3 paths with spaces (#3565) [ce48762]
  • Fix string literal method names with parens (#3604) [8278078]
  • Fix submit command in error message for grid executors that pipe wrapper script (#3548) [40ebd30]
  • Fix typos in the documentation [skip ci] (#3640) [eccc113]
  • Fix unique fingerprint for Wave bundle resources [b59fa72]
  • Log exception when an unexpected occurs (#3603) [9aeca99]
  • Minor change on container resolution [23d47de]
  • Refactor httpfs configuration [445218a]
  • Remove deprecated buckets field [0a355ac]
  • Remove leading/trailing special chars from tag [7d3cc70]
  • Remove unused -with-k8s CLI option (#3624) [85b6e7d]
  • Update config.rst (#3655) [1555e18]
  • Update Fusion docs [12782ee]
  • Bump Fusion 2.1 [f48ef5b]
  • Bump Groovy 3.0.15 [7a3ebc7]
  • Bump Micromamba 1.3.1 [aa2bf37]
  • Bump Spock 2.3 [9f0dac3]
  • Bump nf-wave@0.7.1 [b797fac]
  • Bump nf-tower@1.5.10 [dd2f69d]
  • Bump nf-google@1.7.0 [8cb9fa3]
  • Bump nf-amazon@1.15.0 [7ccca43]

23.01.0-edge - 14 Jan 2023

  • Add support for rclone as stageOutMode option [fde2ac2]
  • Add queueGlobalStatus config setting [f333954]
  • Add support for bearer token to GithubRepositoryProvider [c4d3938] [a2d2cbf]
  • Add -with-fusion cli option [d22337c]
  • Add support for Fusion container custom options [56e29d3]
  • Add schedulingPriority option to AWS Batch (use with shareIdentifier) (#3505) [06960bb]
  • Fix support for AWS ACL for Batch #2671 [a964491]
  • Fix Java options.release in Gradle build [b362d6f]
  • Fix nf-httpfs module name in build file [568e47f]
  • Fix GitHub creds in CI build [4c4d3f8]
  • Fix FilePorter concurrency issue (#3511) [11ccfa2]
  • Fix watchPath hang shutdown execution [bac0ced]
  • Fix "no such file" error message to "no such file or directory" (#3547) [c292d84]
  • Improve local exec workdir validation [4a3a272]
  • Improve container native executor configuration [0312637]
  • Improve AWS batch exit code reporting [d1bb2fe]
  • Improve channel factories error message [0215b9f]
  • Improve Google Batch executor [c0a25fc]
  • Improve Fusion config [902e5b3] [52f4c5d]
  • Improve redirection on Wave client [124cfb3]
  • Remove unnecessary Fusion env var [dfa4755]
  • Remove deprecated method 'just' [d17b3c4]
  • Remove deprecated methods [75e6503]
  • Remove DSL1 deprecated code [5d290a4]
  • Cleanup build from tmp manifests [326b383]
  • Minor compilation improvements [4188a6a]
  • Migrate all tests to DSL2 [14257d4]
  • Bump 23.01.0-edge version [9ec3144]
  • Bump groovy 3.0.14 [7c20423] [6f3ed6e]
  • Bump Grengine 3.0 [c0b1a7a]
  • Bump nf-wave@0.7.0 [45d274e]
  • Bump nf-tower@1.5.9 [db0ebe7]
  • Bump nf-google@1.6.0 [a663fe1]
  • Bump nf-console@1.0.5 [45fd53a]
  • Bump nf-codecommit@0.1.3 [cf39ef8]
  • Bump nf-azure@0.15.1 [7a6a78a]
  • Bump nf-amazon@1.14.0 [41fdcc7]

22.12.0-edge - 13 Dec 2022

  • Add fair process directive [60d34cf]
  • Add support for singularity registry setting [37c1aeb]
  • Add AWS profile config setting [66f4669]
  • Add support for AWS profile when resolving region [d894770]
  • Add support for Sarus container engine (#3470) [54673f1]
  • Add support for Fusion ARM64 client [d073c53]
  • Add allowedLocations option to google batch (#3453) [c619eb8]
  • Add support for AWS config profile in NF config [3711267]
  • Add warning on Google Logs failure [bdbcdde]
  • Add possible values of status in trace.txt to the documentation (#3451) [2425fcf]
  • Add support for AWS Glacier restore [b611076]
  • Add support for S3 storageClass to publishDir [066f920]
  • Add MathHelper utility class [7eecb26]
  • Fix Wave layer invalid checksum due to not closed stream [e188bbf]
  • Fix Fusion test [2245a1c]
  • Fix Run fails when home is a symlink [9ff820f]
  • Fix math overflow when copying large AWS S3 files [f32ea0b]
  • Fix Quote the logName in the Cloud Logging filter (#3464) [b397506]
  • Fix Google Batch cloud logging (#3443) [e2bbcf1]
  • Fix Tower plugin min nextflow requirement [1713a1c]
  • Fix TowerArchiver resolve envar paths relative to baseDir (#3438) [46af18e]
  • Error & info messages, code comments language fixes (#3475) [29ae36c]
  • Replace egrep with grep -E (#3485) [ac0c303]
  • Gradle build optimizations (#3483) [19182a5]
  • Refactor virtual FS schemes to XPath class [fd59b94]
  • Update concat operator description (#3426) [e8d8c3b]
  • Clarify usage of additional options for path qualifier (#3405) [0b70acb]
  • Clarify limitation of -with-docker in the docs (#3408) [79afc85]
  • Expose process queue as K8s pod label [4df8c8d]
  • Prefix nextflow K8s labels with nextflow.io prefix [9951fcd]
  • Remove deprecated code [c0b164f]
  • Rewrite fetchIamRole and fetchRegion to use AWS SDK (#3425) [e350f31]
  • Improve Wave config error reporting [ae50266]
  • Improve K8s retry on transient failures [d86ddc3]
  • Remove DSL1 output mode [fa400d5]
  • Remove support for DSL1 multi into [f664af4]
  • Bump nf-...
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Version 23.03.0-edge

19 Mar 19:34
20fb59c
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Version 23.03.0-edge Pre-release
Pre-release
  • Add Azure batch pool virtualNetwork option (#3723) [e3917b8]
  • Add basePackages option to Wave config [7e82781]
  • Add error message for missing container image with Google Batch (#3747) [6419e68]
  • Add notifyFilePublish optional source argument (#3737) [a65a9ff]
  • Add retry strategy on Bash wrapper write logic [1e38274]
  • Add support for AWS S3 Glacier Retrieval Tier (#3680) [fab6bd5]
  • Add sync invocation on job completion (#3678) [e29c4e4]
  • Add workflowId to Wave request [025ff9d]
  • Add Clone result list objects before output binding [3876208]
  • Add plugins option to kuberun command (#3766) [6515294]
  • Fix Google Batch logging exception [d7e38e9]
  • Fix Java Matcher serialization [6aecc4e]
  • Fix Logger failure type detection [f1b89c1]
  • Fix Orphaned processes when using Singularity [7236f83]
  • Fix groupTuple with mismatching tuple cardinality [1d32e2c]
  • Fix special chars escaping in container env [b93634e]
  • Fix commit revision type for Azure DevOps repos (#3721) [fb71767]
  • Improve DAG API (#3703) [21afb35]
  • Improve Wave docs [7299dac]
  • Improve fair directive docs (#3677) [7ca7520]
  • Improve transpose and groupTuple examples in the docs (#3685) [7870dfc]
  • Increase pwd obfuscation min length [ba23d03]
  • Make GroupKey cloneable (#3738) [0760b0f]
  • Prepare Nextflow for the CWS Plugin (#3727) [fd8bf70]
  • Remove DNAnexus page from docs (#3695) [fa58c18]
  • Remove outdated FAQ page from docs (#3683) [e59c7fb]
  • Remove unused classes [9fa8d75]
  • Update Azure VM sizes (#3751) [1d06e9a]
  • Enable Fusion on Google Batch tests [2f1b109]
  • Bump groovy 3.0.16 [d3ff5dc]
  • Bump nf-wave@0.8.0 [aa1b065]
  • Bump nf-google@1.7.1 [2aaaf2a]
  • Bump nf-azure@0.16.0 [f358b00]
  • Bump nf-amazon@1.16.0 [2395187]

Version 23.02.1-edge

26 Feb 19:57
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Version 23.02.1-edge Pre-release
Pre-release
  • Add Fusion logs and tags config [0919207]
  • Add support for NXF_DEBUG to K8s task handler [ci fast] [828583d]
  • Add support for Mamba HTTP-based lock files [ci fast] [7fe88c8]
  • Add container name validation [c3b6d9a]
  • Add Fusion for Google storage docs [34fcfe0]
  • Improve K8s auth token discovery [ci fast] [44f8cc0]
  • Bump nf-wave@0.7.2 [1c697ab]
  • Bump amazoncorretto:17.0.6 [a33a6f4]