Skip to content

Issues: nextflow-io/nextflow

Beta
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

467 Open 3,032 Closed
467 Open 3,032 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Offline mode (NXF_OFFLINE='true') prevents running pipelines from local file:/ bare Git repositories
#6006 opened Apr 24, 2025 by nz-mtra
1
Publishing file issue in 25.03.1-edge
#6004 opened Apr 24, 2025 by mattheww95
1
Support for Pyxis executor/slurm
#5992 opened Apr 21, 2025 by TheLukaDragar
3
Stack overflow error when referencing workflow constant that does not exist bug
#5986 opened Apr 18, 2025 by ajmaurais
1
1
Update vm list sizes for Azure to current list, important VMs are missing. executor/azure-batch
#5983 opened Apr 18, 2025 by rijssel
2
Possible vulnerability in Jcommander version 1.35
#5981 opened Apr 17, 2025 by JosuaCarl
1
module support for zsh
#5980 opened Apr 16, 2025 by shaze
K8s executor generates .command.run with hardcoded host paths on macOS with Minikube executor/k8s
#5973 opened Apr 14, 2025 by DevdudeSami
New method templateFile for replacing template variables in a file resource with values from context
#5962 opened Apr 11, 2025 by heuermh
3
Job arrays support for HTCondor executor/htcondor
#5960 opened Apr 11, 2025 by vivekvenkris
2
[Proposal] Move CLI commands for project management to subcommands
#5959 opened Apr 10, 2025 by bentsherman
1
5
Add support for network tags in Google Batch executor
#5950 opened Apr 7, 2025 by ejseqera
Nextflow unable to check for existence of task outputs under fusion symlinks
#5948 opened Apr 5, 2025 by robsyme
1
Conda Unable to Create Environment software/conda
#5947 opened Apr 5, 2025 by FrostFlow13
1
6
Usage of secrets in Workflow Script on AWS Batch and Platform
#5943 opened Apr 3, 2025 by FriederikeHanssen
1
log.error and error does not print to sderr
#5942 opened Apr 3, 2025 by maxulysse
Merge of conflicting process names in logs
#5940 opened Apr 3, 2025 by kdesnos
2
Repo config file for lint / format
#5934 opened Apr 1, 2025 by ewels
9
Timestap format should be human-readable
#5925 opened Mar 26, 2025 by JosuaCarl
1
Graceful fallback when array is used on unsupported executors
#5924 opened Mar 26, 2025 by itrujnara
5
Process spot directive lang/processes
#5923 opened Mar 26, 2025 by adamrtalbot
PBS executor not working for task.config.getCpus() == 1 if no default set cluster executor/pbs
#5922 opened Mar 25, 2025 by fbartusch
2
Nextflow CPU limit does not take effect lang/config
#5921 opened Mar 25, 2025 by Jasonqte
1
Job Array with queueSize exceeds queueSize bug
#5920 opened Mar 25, 2025 by Joon-Klaps
@jorgee
1
False positive Fusion license warning storage/fusion
#5919 opened Mar 25, 2025 by pditommaso
ProTip! no:milestone will show everything without a milestone.