Releases: nextflow-io/nextflow
Releases · nextflow-io/nextflow
Version 25.04.2
Version 25.04.1
- Add Beta annotation to LinStore [3bd0d73]
- Add data lineage guide (#6044) [7f7fb63]
- Add more excludes to cmd lint [fc52c84]
- Add support for ARM and Snapshots (#6057) [ef4c386]
- Add version to Lineage data model (#6037) [5c2c283]
- Fix IllegalArgumentException on publish operator [ecdbe21]
- Fix linting of output
label
directive (#6065) [74bf33a] - Fix selector expression documentation (#6050) [548c87b]
- Improve lineage checksum validation [d708bf0]
- Improve not found error in lineage
render
(#6061) [e55419a] - Make config parser v2 compatible with AssetManager (#6042) [aab5574]
- Refactor lineage model using v1beta1 package name [63d5915]
- Support fromPath with pattern in Lineage Pseudo-FS (#6054) [ce165c0]
- Bump plugin template to v0.2.0 (#6062) [96c8893]
- Bump nf-wave@1.12.1 [8cabfd7]
Version 25.04.0
- Add Support for Google Batch network tags (#5951) [d6e4d6c]
- Add Trace observer v2 (#6014) [c4437c1]
- Add allowed plugins list (#6049) [e22882e]
- Add azure.batch.jobMaxWallClockTime config option (#5996) [74963fd]
- Add config error checking to
run
command (#5998) [b0191fa] - Add lineage to gitignore [02e1a54]
- Add plugin create command (#6032) [68865f7]
- Add socketTimeoutException to retryable condition [b676e99]
- Add support for Java 24 [a47ceef]
- Add timezone to lineage list timestamp [77736b5]
- Add verbose AWS Batch job cleanup logging [504bd2d]
- Add Support downloading plugins from OCI registries (#6016) [b41c65d]
- Add Support prefetching plugins metadata from plugins registry (#5887) [37d433d]
- Bring topic channels out of preview (#6030) [4b1b008]
- Data Lineage quick fixes (#6045) [f3cee76]
- Data Lineage workflow outputs fixes (#6041) [2cb49d0]
- Data Lineage documentation (#5999) [c0bfc09]
- Data Lineage programmatic API (#6003) [85b9d00]
- Fix NPE when params value is null [c7316ea]
- Fix
lineage find
command arguments validation (#6034) [375dc17] - Fix concurrent modification error in
lint
command (#6053) [ccf5705] - Fix errors in output fragment (#6020) [f947c9b]
- Fix false error in workflow output (#5982) [039ad40]
- Fix small formatting inconsistencies (#6024) [c3a4760]
- Fix task progress percentage with failed tasks (#5868) [7e931e8]
- Fix timeout in failing test [cf3e166]
- Improve plugin template update [d33c506]
- Improve process creation logging [0121670]
- Make plugins log less verbose [38410fd]
- Minor allow null output params and values [53824bb]
- Refactor lineage annotations as list (#6022) [9280b59]
- Remove test constructors or mark as TestOnly (#5216) [d4fadd4]
- Replace output
labels
withlabel
directive (#6035) [f99bcd3] - Separate language and runtime reference docs (#6018) [75ad21d]
- Split standard library docs into multiple pages (#5993) [2f82d23]
- Store lineage meta in root location and default to .lineage path [d1cae3b]
- Use
channel
namespace to access channel factories (#6029) [26557f0] - Use the same antlr4 dep as Groovy 4 (#5990) [bd33a76]
- Bump plugin template v0.1.0 [b54e78f]
- Bump repository provider connection timeout to 60 secs [39aaa83]
- Bump nf-google@1.21.0 [b7aba74]
- Bump nf-azure@1.16.0 [e8304c1]
- Bump nf-amazon@2.15.0 [c5100f6]
Version 25.03.1-edge
Version 25.03.0-edge
- Add Google Batch
gcsfuseOptions
(#5991) [1d4dd57] - Add
fs
command to CLI help (#5967) [c0566aa] - Add lint command (#5908) [8699cc6]
- Add support for Fusion Snapshots (#5954) [d7f047f]
- Add support for data and execution lineage (#5715) [20e06da]
- Add Workflow outputs (third preview) (#5909) [2e2dea4]
- Add Manage AWS Batch Unscheduled jobs (#5936) [44abe60]
- Document process/workflow recursion (#5974) [72bc4c2]
- Document release notes (#5975) [368db5c]
- Fix Bash escape in build script [c8750a0]
- Fix bugs in workflow outputs (#5978) [c7536c9]
- Fix kebab-case normalization for params file (#5989) [9a045f8]
- Fix possible syntax error in Mermaid DAG renderer (#5935) [e3b8ca4]
- Fix race condition in unit tests (#5955) [cff7bf8]
- Fix recursion snippets in workflow docs (#5979) [ac71280]
- Fix repeated warning for local executor (#5961) [1199965]
- Fix validation of plugin config options (#5952) [60f1d1f]
- Refactor K8s support as core plug-in (#5965) [27ecb89]
- Refactor TraceObserver as interface (#5963) [8826134]
- Removed unused thread pool factory [fac2e4b]
- Revert Bump Fusion to version 2.5 [49b58d2]
- Support
dag.direction
fordot
DAG format (#5941) [834cee4] - Update Azure Batch VM sizes and regions (#5985) [297150b]
- Update shell block deprecation notice (#5972) [fea6785]
- Bump Gradle 8.13 [e19aeed]
- Bump nf-wave@1.12.0 [1ec04db]
- Bump nf-googlee@1.20.0 [5fce509]
- Bump nf-azure@1.15.0 [45e76d7]
- Bump nf-amazon@2.14.0 [8615aec]
Version 24.10.6
Version 25.02.3-edge
Version 25.02.2-edge
- Add nf-lang module from language-server (#5876) [36153c6]
- Add section about include addParams to syntax guide (#5946) [d084299]
- Add tower plugin when fusion is enabled [579873b]
- Fix Nextflow console (#5937) [0206d1f]
- Fix console with v1 parser only [c733b37]
- Fix date format in Wave containers meta (#5903) [59536c0]
- Fix grammar for reference to an operator (#5914) [7d3cb2b]
- Fix typo in comments (#5891) [47a0cc1]
- Fix Preserve workflow context in DAG for Mermaid renderer (#5918) [6da5496]
- Chore Improve deprecation warnings (#5939) [ea60dfb]
- Chore Move compile-to-groovy visitors into nf-lang (#5910) [0f58857]
- Chore Move foreign file staging after storeDir evaluation (#5759) [2c53d9b]
- Chore Add nf-lang type checking utils (#5913) [4be204f]
- Bump nf-console@1.2.1 [cd3b1f9]
- Bump nf-tower@1.11.1 [587d627]
- Bump nf-wave@1.11.1 [e5fb769]
Version 25.02.1-edge
Version 25.02.0-edge
- Add cpu-shares and memory limits to Azure Batch tasks (#5799) [f9c0cbf]
- Add Config parser v2 (and loader) (#4744) [b019b0b]
- Add Wave container metadata to Platform traces (#5724) [b81178c]
- Add disk directive support in Azure Batch (#5784) [113d725]
- Add example of dynamic directive with input file (#4545) [2ebeb34]
- Add static config schema checking (#5816) [2430ea6]
- Add update guide for spot retry strategy (#5872) [f053b81]
- Add Script parser v2 (#4613) [7e3868d]
- Fix Align container platform with
arch
directive when using Wave (#5847) [b9d23e2] - Fix Fail if glob does not exist with
checkIfExists: true
(#4224) [ab358dc] - Fix Consider AWS China as custom endpoint (#5840) [232ce9d]
- Fix Flaky tests using random server port [e25d309]
- Fix Google Batch autoRetryExitCodes bug (#5828) [cfeedd6]
- Fix Ignore Azure pool already exists error (#5721) [e267961]
- Fix Prevent S3 global option when using custom endpoints (#5779) [ed9da46]
- Fix bugs with strict config parser (#5854) [8f9fe0a]
- Fix dynamic publish path (#5809) [6a81c01]
- Fix false error in variable visitor (#5765) [c3f67db]
- Fix race conditions in e2e tests (#5859) [5081274]
- Fix subgraph name collisions in Mermaid DAG (#5843) (#5860) [1d2e7bf]
- Improve GH warning reporting [5ead5ba]
- Improve Google Batch support for GPUs (#5406) [420fb17]
- Improve docs for process path input/output arity (#5842) [15c6f3c]
- Improve fusion-symlink.nf test (#5819) [138a1ff]
- Improve operator summary (#5880) [a5f1379]
- Improve params documentation (#5800) [976e002]
- Improve storeDir error message (#5791) [da5f759]
- Remove Spack from Wave (2nd) [076c823]
- Remove Spack from Wave assets [9c554de]
- Remove changed-files GH action due to sec vulnerability [00a53b9]
- Remove invalid config option
azure.managedIdentity.tenantId
(#5846) [6ce8d64] - Remove stack trace from fusion license warn [3e7670f]
- Remove unused DSL1 warning (#3671) [bf18ee8]
- Skip wave tests when tower access token is not available [6d2dafc]
- Update Platform token error message [18b6934]
- Update config-to-groovy visitor (#5867) [a23f684]
- Update issue and PR templates (#5805) [d8c8151]
- Update metrics tutorial (#5853) [130a9c8]
- Use parallelization in Gradle build (#5830) [c02fe91]
- Use semver to pin only major/minor plugin versions (#5435) [80dec14]
- Validates Azure region before checking available VMs (#5108) [080893a]
- Bump Ubuntu 22.04 as default SKU for Azure Batch (#5804) [e0ba536]
- Bump groovy 4.0.26 [f740bc5]
- Bump nf-amazon@2.13.0 [cca9725]
- Bump nf-azure@1.14.0 [38e0435]
- Bump nf-console@1.2.0 [98da841]
- Bump nf-google@1.19.0 [b0fc9de]
- Bump nf-tower@1.11.0 [d003e2f]
- Bump nf-wave@1.11.0 [b1df834]