Version 0.13.2

• Handle staging in the local process directory of files on remote/foreign file systems
• Fixed issue in resources stats tracing script -- awk uses scientific notation for numbers instead of decimal format.
• Fixed external links to Groovy docs
• Fixed issue #40 -- Cannot find java binary on Mac OSX
• Fixed missing DynamicParameter in usage string
• Fixed docker run —-cpuset command line option when using crg executor

Version 0.13.1

• Fixed IllegalStateException when executing a script in Nextflow console

Version 0.13.0

• Added support for AWS S3 storage
• Added support for ClusterK Cirrus cloud scheduler
• Added multiple debugging level in command scripts by using NXF_DEBUG variable
• Added ability to disable docker kill command
• Added explicit entrypoint definition in docker run command
• Added uge executor as alias of SgeExecutor class
• Added -D JVM properties command line option
• Added .command.log to grid executors
• Separated stdout and stderr outputs
• Refactored DRMAA executor to a separate sub-project
• Refactored application packaging based on Capsule modes
• Refactored application installer downloading dependencies at runtime
• Optimised file attributes access usage
• Increased log and trace files rolling max index to 9
• Print revision and commit ID on pipeline startup
• Improved handling of docker cpuset for crg executor
• Improved TraceFileObserver to flush written content
• Improved info <pipeline> command with -d option that shows git revision commit IDs
• Fixed issue #39 - Per process containers not working with -with-docker option
• Upgraded Groovy runtime to version 2.3.11
• Upgraded Logback library to version 1.1.3

Version 0.12.5

• Fixed regression preventing jobs cleanup when nextflow process is killed
• Fixed issue when command line flag has not value making it to consume following option
• Added uge executor as alias of SgeExecutor class
• Upgraded Spock testing library to version 1.0
• Improved log messages

Version 0.12.4

• Added suspended job status handling to SLURM executor -- Issue #36
• Added print and println operators plus tests and updated docs
• Fixed issue on view operator when specifying a closure
• Fixed Docker image resource request in crg executor
• Improved task hash key generation and task variables handling
• Compute baseDir and workDir as string values when creating task unique hash
• Improved sum operator to allows it to handle lists with varying size
• Upgrading Groovy runtime to version 2.3.10

Version 0.12.3

• Added support for module and container fields in execution trace log
• Fixed a small inconsistency on polling monitor queue size for local executor when using single core or two-cores cpu
• Enhanced process key generation including global variables referenced in the process scope
• Enhanced sum operator and added mean operator

Version 0.12.2

• Fixed issue on some SGE implementation where -terse directive in job script is not working
• Downgrade Capsule to 0.9.0 due to an issue in version 0.10.0 - puniverse/capsule#56

Version 0.12.1

• Fixed NoSuchMethodException issue on Java 1.7.0_01 due to missing private constructor
• Fixed logging issue on Nextflow console
• Fixed issue view operator which hung when used on a dataflow variable
• Upgrade SLF4J to version 1.7.10
• Upgrade Capsule to version 0.10.0
• Removed dependency on jsr166y module
• Removed synchronized declaration on Session cleanUp method

Version 0.12.0

• Added afterScript/beforeScript directives
• Added tag directive to label task executions with a custom identifier
• Added dynamic directives evaluation
• Added support for dynamic input/output file names with closures
• Added ifEmpty operator
• Added view operator
• Added remainder optional parameter to phase operator
• Removed 'undef' directive
• Refactored grid executors so that jobs directives are added on top of script wrapper
• Renamed ContextMap to TaskContext
• Renamed TaskConfig to ProcessConfig
• Renamed LocalConfig to TaskConfig
• Shared process declaration has been deprecated
• Print pid/hostname in the status log
• Upgraded to Groovy 2.3.9 and Slf4j 1.7.8

Version 0.11.4

• Fixed issue in TextFileCollector empty condition that was creating a empty split file
  when the split size was equals to the number or records
• Fixed bug that prevents a job is added to the polling queue when submit operation fails
• Fixed issue #24 -- Http/s proxy environment variables are not used properly
• Added more strict checks on $JAVA_CMD executable and $JAVA_HOME folder
• Upgraded to Groovy 2.3.8