file upload fails

[scheckley]

uploading the RNA seq example data files returns:

Listening on http://0.0.0.0:3838 Warning: Error in read.table: 'file' must be a character string or connection 89: stop 88: read.table 87: read.csv 83: observe 82: <observer:observeEvent(input$uploadData)> 3: runApp 2: print.shiny.appobj 1: <Anonymous>

R version 4.5.1 (2025-06-13)

Dependencies installed as described in the readme.

[sunyumail93]

Hello, would you be able to solve this issue now? I tried the example dataset today (https://xomicsshiny.bxgenomics.com/RNA_Seq_Demo.zip) using the public server (https://xomicsshiny.bxgenomics.com/) and it worked as expected.

[scheckley]

i have some leave approaching but i will take a look if i can. thanks for responding to this.

[scheckley]

uploading the individal csv files still returns: Warning: Error in read.table: 'file' must be a character string or connection

However, converting them to an Rdata file using your script and loading that Rdata file does load them into the UI.