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Add validation of samplesheet

improvement

Status: Open.

#441 In genomic-medicine-sweden/jasen;

· samuell opened on Aug 22, 2025

Update docs about new required columns

Status: Open.

#440 In genomic-medicine-sweden/jasen;

· samuell opened on Aug 22, 2025

Replace <code>download_ncbi.py</code> use with curl command in Makefile

improvement

Status: Open.

#439 In genomic-medicine-sweden/jasen;

· samuell opened on Aug 21, 2025

Installation issue with chewbbaca

bugSomething isn't workingSomething isn't working

Status: Open.

#435 In genomic-medicine-sweden/jasen;

· Emkago opened on Jun 25, 2025

Update <code>install.md</code> pertaining to tbprofiler_dbs directory containing bed

Status: Open.

#430 In genomic-medicine-sweden/jasen;

· ryanjameskennedy opened on Jun 16, 2025

Kraken disk/network overload

improvement

Status: Open.

#425 In genomic-medicine-sweden/jasen;

· LordRust opened on May 5, 2025

· 

Version 1.4.0

Take another look at pubmlst updating script

bugSomething isn't workingSomething isn't working

highHigh priorityHigh priority

Status: Open.

#422 In genomic-medicine-sweden/jasen;

· ryanjameskennedy opened on Apr 14, 2025

· 

Version 1.2.0

add variant caller suitable for LR

lowLow priorityLow priority

Status: Open.

#420 In genomic-medicine-sweden/jasen;

· Emkago opened on Mar 28, 2025

· 

Version 1.3.0

adapt prp to report results from LR analysis

highHigh priorityHigh priority

improvement

WIPWork in progressWork in progress

Status: Open.

#419 In genomic-medicine-sweden/jasen;

· Emkago opened on Mar 28, 2025

· 

Version 1.2.0

Make args to Flye species specific

improvement

mediumMedium priorityMedium priority

Status: Open.

#415 In genomic-medicine-sweden/jasen;

· Emkago opened on Mar 18, 2025

· 

Version 1.3.0

Change kpneumoniae cgmlst scheme to pasteur scheme

improvement

mediumMedium priorityMedium priority

Status: Open.

#405 In genomic-medicine-sweden/jasen;

· ryanjameskennedy opened on Feb 18, 2025

· 

Version 1.4.0

Add kleborate to kpneumoniae workflow

mediumMedium priorityMedium priority

new analysis

Status: Open.

#404 In genomic-medicine-sweden/jasen;

· ryanjameskennedy opened on Feb 18, 2025

· 

Version 1.4.0