My post processing pipeline for light sheet data. Includes single plane splitting, NOT motion correction, montage formation, dFF calculation, video processing, PCA, ICA, tSNE, IsoMap, non negative matrix factorization. IMPORTANT this project needs to be nested with the CaImAn project from the Simons Foundation.
Please download the files from this project, and nest them within the CaImAn project which can be downloaded from the Simons Foundation.