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  1. LSCI_analysis LSCI_analysis Public

    This repository concerns the work done for my MSci investigative honours project at UoG, BIOL5287P. The broader topic is the application of laser speckle contrast imaging in the field of neural con…

    Python 3

  2. LSM_Analysis_without_MC LSM_Analysis_without_MC Public

    My post processing pipeline for light sheet data. Includes single plane splitting, NOT motion correction, montage formation, dFF calculation, video processing, PCA, ICA, tSNE, IsoMap, non negative …

    Python 1

  3. LSM_setup_control LSM_setup_control Public

    Run acquisition to control the labview software of the galvos and piezo.

    Python 1

  4. Behaviour_Analysis Behaviour_Analysis Public

    Scripts for analysing long-term and acute drug experiments run in the DanioVision system.

    Python

  5. pERK_Processing pERK_Processing Public

    Multiple scripts for processing of aligned pERK stacks

    Python

  6. Custom_Tracking Custom_Tracking Public

    Custom tracking code to track single fish from 96 well plate.

    Python