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Pull requests: czbiohub-sf/biahub

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Pull requests list

Tiling
#165 opened Oct 1, 2025 by srivarra • Draft
Protocol for neuromast registration
#164 opened Sep 28, 2025 by tayllatheodoro • Draft
2 of 3 tasks
@tayllatheodoro
BiaHub Registration & Stabilization Refactoring
#162 opened Sep 23, 2025 by tayllatheodoro • Draft
@tayllatheodoro
1
add sample analysis to debug beads registration script
#151 opened Sep 3, 2025 by tayllatheodoro Loading…
Add affine_fliplr option for manual registration
#150 opened Sep 2, 2025 by talonchandler Loading…
1
Add execution time prints
#129 opened Aug 8, 2025 by tayllatheodoro Loading… Performance Optimization
3
Check Slurm Job logs status
#126 opened Aug 7, 2025 by tayllatheodoro • Draft
2 of 3 tasks
Pipeline Reliability
@tayllatheodoro
5
Compute per patch stats
#109 opened Jul 23, 2025 by edyoshikun • Draft Advanced Analysis
1
Concatenate with OME-Zarr v0.5 and sharding
#104 opened Jul 3, 2025 by ziw-liu • Draft Data Infrastructure
11
Updating the segmentation to use Cellpose SAM
#101 opened Jun 16, 2025 by edyoshikun Loading… Advanced Analysis
14
characterize-psf with larger datasets
#62 opened Mar 18, 2025 by talonchandler Loading… Advanced Analysis
1
Correct distortion as estimated with discorpy
#39 opened Feb 5, 2025 by ieivanov • Draft Advanced Analysis
Render 2D crops enhancement New feature or request
#32 opened Dec 19, 2024 by ziw-liu • Draft Data Infrastructure
Add pyramids on cpu based on Jordao's code
#12 opened Oct 11, 2024 by ieivanov • Draft
2 tasks done
Data Infrastructure
@srivarra
8
Analysis tests
#10 opened Sep 26, 2024 by tayllatheodoro Loading… Pipeline Reliability
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