treeprofiler v2.0.4

update in treeprofiler v2.0.4

• add --alignment-width to be able to customize alignment visualization width and also for domain layout
• add --midgroup to allow set midgroup for the tree
• add show-heatmap-text to allow showing value in heatmap layout
• adjust domain coordinates
• correct dealing with duplicated columns
• update documentation

treeprofiler v2.0.2

TreeProfiler update in version 2.0.2

• created treeprofiler-desktop, local gui interface
• create profiling-list, allows user limit the profiling items
• create LCA taxonomy layout to show the lca in collapsed nodes
• change TaxaRectangular layout from multi columns to only one column
• defautly mute the taxonomy layouts for efficiency
• include motus taxonomy database
• increate speed for pre loading in treeprofiler-plot

treeprofiler v1.2.4

version 1.2.4 allows

• add barplot colored by other columns
• custom config for highlight and collapse
• bubble layout for categorical data
• ancestral character reconstruction for continuous traits using ML/BY with BM/OU model

treeprofiler v1.2.3-beta

version v1.2.3 include:

• analytic method
• color config
• new layouts for categorical data
• allow data matrix annotation and visualization
• optimize algorithm for preannotation in profiling annotation and visualization

treeprofiler v1.2.2

• rank-limit to prune taxonomic annotated tree to classification
• correct the way to set barplot range

treeprofiler v1.2.1

fixed issue of import from ete4 core

treeprofiler v1.2.0

correct not standard arguments

such as
"--input_type" to "--input-type"

"--barplot_layout" to "--barplot-layout"

...

Release TreeProfiler v1.1.0

TreeProfiler_v1.1.0

Merge branch 'main' of https://github.com/compgenomicslab/TreeProfile…