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@cirmuw

Computational Imaging Research Lab

CIR Lab is part of the Department for Biomedical Imaging and Image-guided Therapy at Medical University of Vienna

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  1. dynamicmemory dynamicmemory Public

    Code for continual machine learning using a dynamic memory (Perkonigg et al. Nat Comms 2021)

    Python 16 4

  2. EvolutionOfCorticalShape EvolutionOfCorticalShape Public

    Data and tools from the publication "Evolution of Cortical Geometry and its Link to Function, Behaviour and Ecology" by Schwartz et al. for mapping values defined on cortical surfaces between speci…

    Shell 12 3

  3. functional-twin-analysis functional-twin-analysis Public

    This repository contains code to our paper "Disentangling cortical functional connectivity strength and topography reveals divergent roles of genes and environment"

    Python 1

  4. casa casa Public

    Code for Continual Active Learning Using Pseudo-Domains for Limited Labelling Resources and Changing Acquisition Characteristics published in MELBA 2021

    Jupyter Notebook 1 1

  5. LiverDCN LiverDCN Public

    Code for Discovery of Disease, Progress and Treatment Response Markers in Liver Disease with Unsupervised Deep Clustering

    Python

  6. graph_autoencoder graph_autoencoder Public

    Python

Repositories

Showing 10 of 13 repositories
  • fetal-brain-atlas Public

    conditional fetal brain atlas learning

    cirmuw/fetal-brain-atlas’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Sep 5, 2025
  • temporal-representation-learning Public

    This repository provides a supplementary code for Temporal Representation Learning of Phenotype Trajectories for pCR Prediction in Breast Cancer paper. In this work we designed a representation learning method for treatment/dissease progression learning.

    cirmuw/temporal-representation-learning’s past year of commit activity
    Python 0 0 0 0 Updated Sep 5, 2025
  • mtl-ynet Public

    Code for Improving Vessel Segmentation with Multi-Task Learning and Auxiliary Data Available Only During Model Training (Sobotka et al. CMIG 2024)

    cirmuw/mtl-ynet’s past year of commit activity
    Python 0 Apache-2.0 0 1 0 Updated Sep 5, 2025
  • LesiOnTime Public

    LesiOnTime - Joint Temporal and Clinical Modeling for Small Breast Lesion Segmentation in Longitudinal DCE-MRI

    cirmuw/LesiOnTime’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Aug 6, 2025
  • FetGEs Public

    FetGEs: a Deep Learning Approach for Fetal MRI Ganglionic Eminence Segmentation

    cirmuw/FetGEs’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jul 30, 2025
  • LiverDCN Public

    Code for Discovery of Disease, Progress and Treatment Response Markers in Liver Disease with Unsupervised Deep Clustering

    cirmuw/LiverDCN’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 26, 2025
  • EvolutionOfCorticalShape Public

    Data and tools from the publication "Evolution of Cortical Geometry and its Link to Function, Behaviour and Ecology" by Schwartz et al. for mapping values defined on cortical surfaces between species based on their phylogenetic relationship

    cirmuw/EvolutionOfCorticalShape’s past year of commit activity
    Shell 12 3 0 0 Updated Feb 3, 2025
  • fetalfMRIproc Public

    custom workflow for in-utero resting-state fMRI analysis, including preprocessing, quality control, and simulation the hemodynamic response function

    cirmuw/fetalfMRIproc’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jan 6, 2025
  • mamma_anomaly_detection Public
    cirmuw/mamma_anomaly_detection’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 26, 2023
  • functional-twin-analysis Public

    This repository contains code to our paper "Disentangling cortical functional connectivity strength and topography reveals divergent roles of genes and environment"

    cirmuw/functional-twin-analysis’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Jul 26, 2023
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